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20.109(S11):Student presentations (Day8)20.109(S11): Assignments20.109(S11): RNA computational analysis
20.109(S11): RNA engineering report20.109(S11): Spring 2010 schedule20.109(S11): TA notes for module 1
20.109(S11): TA notes for module 220.109(S11): TA notes for module 320.109(S12)
20.109(S12):Amplify aptamer-encoding DNA (Day1)20.109(S12):Aptamer binding assay (Day7)20.109(S12):Assess protein function (Day7)
20.109(S12):Bacterial amplification of DNA (Day3)20.109(S12):Characterize protein expression (Day6)20.109(S12):FNT summary page
20.109(S12):General lab policy20.109(S12):Guidelines for maintaining your lab notebook20.109(S12):Guidelines for oral presentations
20.109(S12):Guidelines for working in the tissue culture facility20.109(S12):Guidelines for writing up your research20.109(S12):Induce protein and evaluate DNA (Day5)
20.109(S12):Initiate cell culture (Day2)20.109(S12):Initiating transcript and protein assays (Day5)20.109(S12):Journal club (Day8)
20.109(S12):Lab tour20.109(S12):Module 120.109(S12):Module 2
20.109(S12):Module 320.109(S12):Module 3 oral presentations20.109(S12):OWW in 20.109
20.109(S12):People20.109(S12):Post-selection IVT and journal club (Day6)20.109(S12):Prepare RNA by IVT (Day3)
20.109(S12):Prepare expression system (Day4)20.109(S12):Preparing cells for analysis (Day4)20.109(S12):Protein-level and wrap-up analysis (Day7)
20.109(S12):Purify RNA and run affinity column (Day4)20.109(S12):Purify aptamer-encoding DNA (Day2)20.109(S12):RNA to DNA by RT-PCR (Day5)
20.109(S12):Reflection assignments summary page20.109(S12):Site-directed mutagenesis (Day2)20.109(S12):Start-up biomaterials engineering (Day1)
20.109(S12):Start-up protein engineering (Day1)20.109(S12):Statement on collaboration and integrity20.109(S12):Student presentations (Day8)
20.109(S12):Testing cell viability (Day3)20.109(S12):Transcript-level analysis (Day6)20.109(S12): Assignments
20.109(S12): Protein engineering report20.109(S12): RNA computational analysis20.109(S12): RNA engineering report
20.109(S12): Spring 2012 schedule20.109(S12): TA notes for module 120.109(S13)
20.109(S13):Assess protein function (Day8)20.109(S13):Bacterial amplification of DNA (Day3)20.109(S13):Characterize protein expression (Day7)
20.109(S13):Context-setting and primer design (Day1)20.109(S13):DNA cloning (Day4)20.109(S13):DNA extraction (Day2)
20.109(S13):DNA sequencing and primer analysis (Day5)20.109(S13):Design experiment (Day1)20.109(S13):Design mutant (Day1)
20.109(S13):General lab policy20.109(S13):Guidelines for maintaining your lab notebook20.109(S13):Guidelines for oral presentations
20.109(S13):Guidelines for working in the tissue culture facility20.109(S13):Guidelines for writing up your research20.109(S13):Induce protein and evaluate DNA (Day5)
20.109(S13):Initiate cell culture (Day2)20.109(S13):Initiating transcript and protein assays (Day5)20.109(S13):Journal club II (Day8)
20.109(S13):Journal club I (Day6)20.109(S13):Lab tour20.109(S13):Module 1
20.109(S13):Module 220.109(S13):Module 320.109(S13):Module 3 oral presentations
20.109(S13):OWW in 20.10920.109(S13):Optional gel purification20.109(S13):PCR and paper discussion (Day3)
20.109(S13):People20.109(S13):Phylogenetic analysis (Day7)20.109(S13):Prepare expression system (Day4)
20.109(S13):Preparing cells for analysis (Day4)20.109(S13):Protein-level and wrap-up analysis (Day7)20.109(S13):Purify protein (Day6)
20.109(S13):Reflection assignments summary page20.109(S13):Site-directed mutagenesis (Day2)20.109(S13):Statement on collaboration and integrity
20.109(S13):Student presentations (Day8)20.109(S13):Testing cell viability (Day3)20.109(S13):Transcript-level analysis (Day6)
20.109(S13): Assignments20.109(S13): Cell-biomaterial engineering report20.109(S13): DNA engineering report
20.109(S13): Primer design summary20.109(S13): Protein engineering report20.109(S13): Spring 2013 schedule
20.109(S13): TA notes for module 120.109(S14)20.109(S14):16S PCR and paper discussion (Day3)
20.109(S14):Begin Western protein analysis (Day2)20.109(S14):Cell preparation for DNA repair assays (Day5)20.109(S14):Complete Western and prepare damaged DNA (Day4)
20.109(S14):DNA cloning (Day4)20.109(S14):DNA repair assays(Day6)20.109(S14):DNA sequencing (Day5)
20.109(S14):Data analysis (Day7)20.109(S14):Design experiment (Day1)20.109(S14):Diagnostic primer design (Day2)
20.109(S14):General lab policy20.109(S14):Guidelines for maintaining your lab notebook20.109(S14):Guidelines for oral presentations
20.109(S14):Guidelines for working in the tissue culture facility20.109(S14):Guidelines for writing up your research20.109(S14):Initiate cell culture (Day2)
20.109(S14):Initiating transcript and protein assays (Day5)20.109(S14):Introduction to cell strains and plating (Day1)20.109(S14):Journal club II (Day8)
20.109(S14):Journal club I (Day6)20.109(S14):Lab tour20.109(S14):Microbial DNA extraction (Day1)
20.109(S14):Microbiome summary20.109(S14):Module 120.109(S14):Module 2
20.109(S14):Module 320.109(S14):Module 3 oral presentations20.109(S14):NHEJ system research article
20.109(S14):OWW in 20.10920.109(S14):People20.109(S14):Phylogenetic and primer analyses (Day7)
20.109(S14):Preparing cells for analysis (Day4)20.109(S14):Primer design memo20.109(S14):Protein-level and wrap-up analysis (Day7)
20.109(S14):Reflection assignments summary page20.109(S14):Statement on collaboration and integrity20.109(S14):Student presentations (Day8)
20.109(S14):Testing cell viability (Day3)20.109(S14):Transcript-level analysis (Day6)20.109(S14): Assignments
20.109(S14): Cell engineering mini-report20.109(S14): Choose system conditions and paper discussion (Day3)20.109(S14): Spring 2013 schedule
20.109(S14): Spring 2014 schedule20.109(S14): TA notes for module 120.109(S14): TA notes for module 2
20.109(S14): TA notes for module 320.109(S15)20.109(S15):16S PCR and paper discussion (Day3)
20.109(S15):20.109 Class Blog summary page20.109(S15):AIV detection assay and analysis (Day7)20.109(S15):Begin Western protein analysis and choose system conditions (Day2)
20.109(S15):Biotemplating on phage nanowires (Day 2)20.109(S15):Cell preparation for DNA repair assays (Day4)20.109(S15):DNA cloning (Day4)
20.109(S15):DNA repair assays (Day5)20.109(S15):DNA sequencing (Day5)20.109(S15):Data analysis (Day7)
20.109(S15):Data analysis and paper discussion (Day6)20.109(S15):Diagnostic primer analysis (Day8)20.109(S15):Diagnostic primer design (Day2)
20.109(S15):Flow cytometry and paper discussion (Day6)20.109(S15):General lab policy20.109(S15):Growth of phage nanowires (Day 1)
20.109(S15):Guidelines for maintaining your lab notebook20.109(S15):Guidelines for oral presentations20.109(S15):Guidelines for working in the tissue culture facility
20.109(S15):Guidelines for writing up your research20.109(S15):Introduction to cell strains and plating (Day1)20.109(S15):Journal club II (Day9)
20.109(S15):Journal club I (Day6)20.109(S15):Lab basics20.109(S15):Lab tour
20.109(S15):Microbial DNA extraction (Day1)20.109(S15):Microbiome data summary20.109(S15):Module 1
20.109(S15):Module 220.109(S15):Module 320.109(S15):NHEJ system research article
20.109(S15):OWW basics20.109(S15):People20.109(S15):Phylogenetic analysis (Day7)
20.109(S15):Phylogentic analysis (Day8)20.109(S15):Primer design memo20.109(S15):Research proposal presentation
20.109(S15):Solar cell assembly (Day 4)20.109(S15):Solar cell testing (Day 5)20.109(S15):Statement on collaboration and integrity
20.109(S15):Student proposal presentations (Day7)20.109(S15):Student registration and questionnaire20.109(S15):Wrap-up and data summary (Day 6)
20.109(S15): Assignments20.109(S15): Biomaterial engineering report20.109(S15): Complete Western and prepare damaged DNA (Day3)
20.109(S15): Mod 3 Day 1 Growth of phage materials20.109(S15): Mod 3 Day 1 Growth of phage materials (Day 1)20.109(S15): Spring 2015 schedule
20.109(S15): TA notes for module 120.109(S15): TA notes for module 220.109(S15): TEM (Day 3)
20.109(S16)20.109(S16):20.109 Class Blog summary page20.109(S16):Assess protein function (Day8)
20.109(S16):Battery assembly and testing (Day5)20.109(S16):Begin Western blot protein analysis and choose system conditions (Day2)20.109(S16):Cathode construction (Day3)
20.109(S16):Cell preparation for DNA repair assays (Day5)20.109(S16):Characterize protein expression (Day7)20.109(S16):Complete Western and prepare damaged DNA (Day3)
20.109(S16):DNA repair assays (Day6)20.109(S16):Data analysis (Day9)20.109(S16):Design mutation primers (Day2)
20.109(S16):Flow cytometry and paper discussion (Day7)20.109(S16):General lab policy20.109(S16):Growth of phage materials (Day1)
20.109(S16):Guidelines for maintaining your lab notebook20.109(S16):Guidelines for oral presentations20.109(S16):Guidelines for working in the tissue culture facility
20.109(S16):Guidelines for writing up your research20.109(S16):Homework20.109(S16):In situ cloning (Day1)
20.109(S16):Induce protein expression (Day5)20.109(S16):Introduction to cell strains and plating (Day1)20.109(S16):Journal Club II (Day8)
20.109(S16):Journal Club I (Day4)20.109(S16):Lab basics20.109(S16):Lab tour
20.109(S16):Module 120.109(S16):Module 220.109(S16):Module 3
20.109(S16):OWW basics20.109(S16):People20.109(S16):Prepare expression system (Day4)
20.109(S16):Purify active materials (Day2)20.109(S16):Purify protein (Day6)20.109(S16):Research proposal presentation
20.109(S16):Research proposal presentations (Day6)20.109(S16):Site-directed mutagenesis (Day3)20.109(S16):Statement on collaboration and integrity
20.109(S16):Student registration and questionnaire20.109(S16):TEM (Day4)20.109(S16): Assignments
20.109(S16): Biomaterials engineering report20.109(S16): Protein engineering presentation20.109(S16): Protein engineering summary
20.109(S16): Spring 2016 schedule20.109(S16): System engineering report20.109(S16): TA notes for module 1
20.109(S16): TA notes for module 220.109(S16): TA notes for module 320.109(S16): TA notes for orientation
20.109(S17):Analyze RNA-seq data (Day7)20.109(S17):Assess cell survival and harvest RNA for quantitative PCR assay (Day3)20.109(S17):Battery assembly and testing (Day5)
20.109(S17):Cathode construction (Day3)20.109(S17):Communication20.109(S17):Complete Western blot and induce DNA damage for survival and quantitative PCR assays (Day2)
20.109(S17):Complete cell survival assay and examine transcript levels in response to DNA damage (Day 4)20.109(S17):Complete cell viability assay (Day9)20.109(S17):Complete data analysis (Day6)
20.109(S17):Confirm cell lines and practice tissue culture techniques (Day1)20.109(S17):Evaluation of purified protein (Day3)20.109(S17):Examine quantitative PCR results (Day9)
20.109(S17):Examine transcript levels in response to DNA damage (Day 4)20.109(S17):Growth of phage materials (Day1)20.109(S17):Guidelines for working in the tissue culture facility
20.109(S17):Homework20.109(S17):Identify chemical structures common among FKBP12 binders20.109(S17):In silico cloning and induction of protein expression (Day1)
20.109(S17):Journal Club II (Day8)20.109(S17):Journal Club I (Day5)20.109(S17):Lab tour
20.109(S17):Module 120.109(S17):Module 220.109(S17):Module 3
20.109(S17):Practice data analysis methods (Day6)20.109(S17):Prepare Western blot and induce DNA damage for quantitative PCR assay (Day2)20.109(S17):Purification of induced protein (Day2)
20.109(S17):Purify RNA for quantitative PCR assay and treat cells for survival assay (Day3)20.109(S17):Purify active materials (Day2)20.109(S17):Research proposal presentation
20.109(S17):Scan slides to identify FKBP12 binders (Day5)20.109(S17):Screen chemical library for FKBP12 binders (Day4)20.109(S17):TEM (Day4)
20.109(S17): Announcements20.109(S17): Assignments20.109(S17): Biomaterials engineering mini-report
20.109(S17): Fall 2016 schedule20.109(S17): M1 Data Summary20.109(S17): M1 Mini-presentation
20.109(S17): Research article20.109(S17): Spring 2017 schedule20.109(S17): TA notes for M3
20.109(S17): TA notes for orientation20.109(S18):Analyze RNA-seq data and prepare for quantitative PCR experiment (Day 4)20.109(S18):Analyze small microarray data (Day3)
20.109(S18):Analyze small microarray data and induce protein expression (Day2)20.109(S18):Assemble and test batteries (Day5)20.109(S18):Class data
20.109(S18):Communication20.109(S18):Complete data analysis (Day7)20.109(S18):Confirm ligand binding using differential scanning fluorimetry assay (Day6)
20.109(S18):Construct cathode with phage-based active material (Day3)20.109(S18):Evaluate protein purity and concentration (Day4)20.109(S18):Growth of phage-based active (cathode) material (Day1)
20.109(S18):Homework20.109(S18):In silico cloning and confirmation digest of protein expression vector(Day1)20.109(S18):Induce DNA damage and apply drug treatments for RNA purification (Day2)
20.109(S18):Induce DNA damage and apply drug treatments for cell viability and identification of regulatory motifs in RNA-seq data (Day8)20.109(S18):Investigate RNA-seq data using public databases (Day5)20.109(S18):Journal club presentations (Day6 and 7)
20.109(S18):Laboratory tour20.109(S18):Module 120.109(S18):Module 2
20.109(S18):Module 320.109(S18):Practice tissue culture techniques and prepare cells for RNA purification (Day1)20.109(S18):Prep notes for M3
20.109(S18):Purify RNA and practice RNA-seq data analysis methods (Day3)20.109(S18):Purify phage-based active (cathode) material (Day2)20.109(S18):Purify protein for secondary assays(Day3)
20.109(S18):Research proposal presentation20.109(S18):SECONDARY ASSAY D2 (Day6)20.109(S18):Test protein activity using peptidyl-prolyl cis-trans isomerase assay (Day5)
20.109(S18):Visualize phage nanowires using TEM (Day4)20.109(S18): Announcements20.109(S18): Assignments
20.109(S18): Biomaterials engineering mini-report20.109(S18): M1 Data Summary20.109(S18): M1 Mini-presentation
20.109(S18): Prep notes for M120.109(S18): Prep notes for M220.109(S18): Research article
20.109(S18): Spring 2018 schedule20.109(S18): TA notes for orientation20.109(S19):Analyze RNA-seq data and prepare for quantitative PCR experiment (Day 4)
20.109(S19):Assemble and test batteries (Day5)20.109(S19):Class data20.109(S19):Communication
20.109(S19):Complete data analysis (Day7)20.109(S19):Complete data analysis (Day9)20.109(S19):Confirm ligand binding using differential scanning fluorimetry assay (Day6)
20.109(S19):Construct cathode with phage-based active material (Day3)20.109(S19):Design cell viability experiment and complete RNA-seq data analysis (Day6)20.109(S19):Etoposide treat cells for RNA purification (Day2)
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