Search results

Jump to: navigation, search

Create the page "Matlab" on this wiki!

Page title matches

Page text matches

  • DNA Melting Part 1: Measuring Temperature and Fluorescence
    ...te the data to a file. The data will be tab-delimited and can be read into Matlab with the <code>load</code> command. * If the DAQ gets short-circuited, it may crash. If this happens, Matlab will frequently give a deceptive error message, for example claiming that t
    27 KB (4,497 words) - 17:49, 19 April 2017
  • DNA Melting Part 2: Lock-in Amplifier and Temperature Control
    # Run the <tt>LockInGUI</tt> in MATLAB. ... good data, then click "Save Data" to record this data to disk. Next, open Matlab, load your SNR output file into an array and run its transpose through the
    20 KB (3,227 words) - 20:05, 7 November 2017
  • Matlab:Simulating DNA melting
    #REDIRECT [[Matlab:Simulating DNA Melting]]
    43 B (5 words) - 18:25, 28 August 2011
  • DNA Melting: Model function and parameter estimation by nonlinear regression
    [[Category:Matlab]] ...m <math>H(\omega)=\frac{1}{\tau s+1}=\frac{1}{\tau j \omega+1}</math>. The MATLAB function [http://www.mathworks.com/help/control/ref/tf.html tf] constructs
    18 KB (2,803 words) - 21:55, 17 August 2017
  • Sandbox
    * [[MATLAB: Estimating resolution from a PSF slide image]] * [[Matlab: Scalebars]]
    4 KB (512 words) - 21:42, 16 August 2016
  • DNA Melting Thermodynamics
    ...right .</math>. Unfortunately, this gets pretty yucky. On the bright side, Matlab and Python are good at calculating yuck.}}
    6 KB (986 words) - 21:43, 1 November 2013
  • DNA Melting: Simulating DNA Melting - Intermediate Topics
    [[Category:Matlab]] To simulate noise, we can use Matlab's <tt>randn</tt> function, which generates normally distributed random numb
    9 KB (1,281 words) - 21:46, 17 August 2017
  • Assignment 8, Part 2: lock-in amplifier and temperature control
    # In MATLAB, run the <tt>LockinGUI</tt> function. ... data, then click "Open file..." to record this data to disk. Next, at the Matlab command line, load your SNR output file into an array and run its transpose
    17 KB (2,813 words) - 22:56, 7 November 2017
  • DNA Melting Report Requirements
    * Remember to append your Matlab code at the end of the pdf file.
    6 KB (864 words) - 18:50, 16 April 2017
  • DNA melting: Identifying the unknown sample
    ... be <math>1-0.95^6\approx 26%</math>. The <tt>multcompare</tt> function in MATLAB implements a correction to the t-test procedure to assure that the ''family ==Multiple comparisons in MATLAB==
    12 KB (1,931 words) - 18:49, 28 November 2017
  • Matlab:Division operators
    [[Category:Matlab]] ==Division operators in Matlab===
    2 KB (283 words) - 14:15, 10 September 2009
  • Python:Simulating DNA Melting
    ...long with the explanatory writeup from [[Matlab:Simulating DNA melting|the Matlab version]] while it runs. In addition to Python, you will need to have insta ...sive cooling. It differs slightly from [[Matlab:Simulating DNA melting|the Matlab writeup]], which was back when forced heating and cooling didn't exist and
    12 KB (1,459 words) - 10:25, 24 May 2011
  • Matlab:Matlab Fundamentals
    [[category:Matlab]] ==Starting Matlab==
    534 B (56 words) - 06:29, 2 September 2009
  • BE Classroom Computer Documentation
    * Matlab (download latest from http://www.mathworks.com)
    1 KB (194 words) - 19:33, 8 August 2014
  • Optical Microscopy Week 3: Experiments
    ...ng_Brownian_Motion this page] for more discussion of Brownian motion and a Matlab simulation.
    15 KB (2,322 words) - 17:14, 18 September 2012
  • Spring09:Todo list
    *** Matlab licenses and configurations
    1 KB (163 words) - 23:56, 9 January 2009
  • 20.309:Course Information
    ...ng Windows 10. Each PC has a National Instruments data acquisition system. MATLAB and LabVIEW software are installed on all lab PCs.
    5 KB (714 words) - 16:37, 7 February 2020
  • Matlab:Image Processing for Fluorescent Microscopy
    [[category:Matlab]] The most important command in Matlab is: <code>doc</code>. For example, type <code>doc imread</code> to get the
    5 KB (752 words) - 22:54, 26 October 2009
  • Lab Manual: Atomic Force Microscopy (AFM)
    ...in <xr id="fig:fig2">Figure %i</xr>. The piezo disk is controlled from the matlab scanning software, which is described in ''[[Lab Manual: Atomic Force Micro ...fine):''' Actuating the piezo disk over a few hundred nanometers using the matlab software. For x- and y-axis positioning (in the sample plane), coarse move
    56 KB (9,320 words) - 20:42, 13 December 2017
  • ThorLabs OTKB optical trapping kit
    ==Matlab OTKB GUI== The manual that describes how to operate the Matlab OTKB GUI as well as describes the hardware setup and shows a picture of the
    24 KB (4,010 words) - 15:32, 5 August 2010
  • Matlab: Simulating Brownian motion
    ...plots a histogram of the values. The second argument - 25 - specifies that Matlab should divide the values into 25 bins.</p> ...lacements. Their sum represents a particle trajectory in 1 dimension. The Matlab function <tt>cumsum</tt> returns the cumulative sum of a vector. The follow
    23 KB (3,474 words) - 21:28, 4 June 2015
  • Fall 2010: Problem Set 3
    Using the example code from the Simulating Brownian Motion in Matlab tutorial (or any other simulation environment you like):
    3 KB (526 words) - 18:41, 28 September 2010
  • Procedure: Particle tracking
    *Computer with Matlab and latest version of particle tracker #Use the Matlab function <code>track</code> to separate the centroids into individual traje
    5 KB (736 words) - 22:05, 4 October 2010
  • Microscopy report outline
    * Include any MATLAB code you developed in an appendix at the end of your report.
    2 KB (351 words) - 17:04, 11 January 2017
  • Spring 2011:3D PSF lab
    The computer controlled stage is being attempted with Matlab software, but it is really easy to just switch to Python control if preferr The camera adapter for Matlab has been successfully installed, but again it would be straightforward to s
    7 KB (1,125 words) - 18:06, 19 March 2014
  • DNA Melting: Simulating DNA Melting - Basics
    [[Category:Matlab]] This tutorial will show you how to simulate the DNA melting experiment with Matlab. The DNA melting apparatus you will build produces two output voltages rela
    13 KB (2,026 words) - 22:46, 15 April 2018
  • Python:DNA melting data analysis
    Matlab .m file, just two columns of numbers. (First column is RTD voltages Matlab because you have to tell scipy and matplotlib how to talk to each
    2 KB (307 words) - 05:02, 13 April 2011
  • Confocal Wiki
    Matlab code existed to generate a laser scan over the sample and to recompose the
    21 KB (3,664 words) - 21:38, 4 June 2015
  • Photobleaching Model
    ...imulating_DNA_melting#Improving_the_model:_photobleaching_.28optional.29 | Matlab DNA melting simulation writeup]] has a fixed percentage of the active fluor ...00059s] check out equation 5, it looks pretty much like what we had in the matlab page. But... their timescales are different, and their derivation rests on
    11 KB (1,755 words) - 23:31, 18 July 2011
  • DNA Melter Improvements
    == Translating MATLAB Into Python ==
    11 KB (1,864 words) - 21:20, 22 July 2011
  • DNA Melting: Processing DNA Melting Data
    Fantastic. You have some [[Matlab:Simulating DNA melting|simulated data]] or [[Lab Manual:Measuring DNA Melti ...thon data analysis are significantly less developed than the corresponding Matlab cribs. Nonlinear fitting in Python has been challenging. If you decide to u
    7 KB (1,108 words) - 17:58, 8 October 2011
  • Converting Gaussian fit to Rayleigh resolution
    [[Category:Matlab]]
    2 KB (292 words) - 23:08, 22 February 2015
  • Optical Microscopy: Part 2 Report Outline
    ... single set of axes for comparison. (Use the <tt>improfile</tt> command in MATLAB.)
    1 KB (227 words) - 18:29, 30 September 2015
  • Williams: Optical Trapping Lab 1
    Matlab : programming language using 'daqtoolbox'<br/> ... is supposed to provide specific functionality, and a bit about the gui in MATLAB. After writing the code, our goals expanded to include writing code to simu
    12 KB (1,943 words) - 03:57, 12 March 2012
  • Resource list: Matlab
    [[Category:Matlab]]
    203 B (20 words) - 18:02, 13 August 2013
  • Course Journal -- Nathan S Lachenmyer
    ** If this doesn't work, restart Matlab
    3 KB (464 words) - 21:52, 27 February 2012
  • Spring 2012:Leanna Morinishi Lab 1
    ...h is supposed to provide specific functionality, and a bit about the UI in MATLAB. Beyond this, we tried to: * How to put a button on a UI in Matlab!!
    13 KB (2,020 words) - 19:56, 9 March 2012
  • Spring 2012: Ajoke Jumoke Williams
    ... taking a Modern Optics class and working in a UROP where I mostly code in matlab, which is pretty ironic since geometric optics was not my friend my sophomo
    2 KB (310 words) - 03:23, 20 May 2012
  • Spring 2012:Leanna Morinishi Journal
    ...ion skin! Looks interesting, can't really do anything beyond that since my Matlab just refuses to do anything. * Matlab continues to give me the error: Undefined function or variable 'parforstart
    14 KB (2,366 words) - 04:50, 17 May 2012
  • Spring 2012:Leanna Morinishi Lab 2
    * Matlab * Matlab Image Acquisition Toolbox<ref>[http://www.mathworks.com/products/imaq/ Math
    6 KB (951 words) - 20:16, 20 March 2012
  • A.Williams: Objectives and Literature Review
    ... with two bessel beams. My goal is to be that time be familiar enough with matlab and bessel beams and holography algorithms, calibrations that should take
    7 KB (1,162 words) - 07:22, 14 March 2012
  • Resource list: Image Enhancement
    [[Category:Matlab]]
    403 B (45 words) - 18:02, 13 August 2013
  • Williams: PSF and Deconvolution Lab 2
    <li>Matlab</li> <li>Matlab Image Acquisition Toolbox[3]</li>
    7 KB (1,229 words) - 02:54, 1 April 2012
  • Spring 2012:Vincent Lee Journal
    Lightfield processing in MATLAB Matlab help. It has been gloriously helpful. I am pretty sure how I can and how I
    8 KB (1,373 words) - 18:43, 13 August 2013
  • Spring 2012:Vincent Lee Lab 2
    * Matlab * Matlab Image Acquisition Toolbox<ref>[http://www.mathworks.com/products/imaq/ Math
    4 KB (611 words) - 21:37, 4 June 2015
  • Spring 2012: Jonathan Gootenberg Lab 2
    * Controlling the microstepper with the DAQ/Matlab interface * Matlab
    6 KB (940 words) - 02:47, 23 May 2012
  • Understanding the lock-in amplifier
    ...his simulation, we have modeled room noise with a Brown noise generator in Matlab because Brown noise is stronger in low frequencies, similar to the room noi <b>Figure 5.</b> In our MATLAB simulation, we generated a low-pass filter and passed the signal from Point
    15 KB (1,965 words) - 16:36, 13 November 2017
  • Optical Microscopy Part 4: Particle Tracking
    ...ng_Brownian_Motion this page] for more discussion of Brownian motion and a Matlab simulation.
    9 KB (1,469 words) - 01:01, 10 March 2016
  • Optical Microscopy: Part 3 Report Outline
    <li>Explain the Matlab algorithm used for data analysis.</li>
    2 KB (355 words) - 19:04, 7 March 2016
  • Optical Microscopy Part 1: Brightfield Microscopy
    ==Recording, displaying and saving images in MATLAB== foo.Initialize</tt>" into the MATLAB console window.</caption>]]
    23 KB (3,758 words) - 22:45, 12 January 2017
  • Optical Microscopy: Brownian motion and microscopy stability
    ...ng_Brownian_Motion this page] for more discussion of Brownian motion and a Matlab simulation.
    7 KB (1,071 words) - 01:05, 13 September 2012
  • Optical Microscopy Part 3: Resolution and Stability
    ...TLAB: Estimating resolution from a PSF slide image|This page]] has example MATLAB code. ...ore you collect data (especially for Part 4). You may download this set of Matlab files to help you get started: [[File:Matlab_Code_Following_Things_2.zip]].
    7 KB (1,168 words) - 18:12, 29 September 2016
  • Particle Tracking Exercise
    2. Develop code in Matlab to measure the diffusion coefficient from the synthetic movie.
    371 B (56 words) - 19:23, 22 February 2016
  • 20.309 development to-do list
    |Rewrite lock-in in Matlab * [[Image acquisition and preprocessing]] (image formats; loading images; Matlab image representations; histograms; contrast enhancement)
    6 KB (738 words) - 18:50, 31 January 2013
  • Locating objects in a fluorescent microscopic image
    # Write a function in Matlab or another languageto compute the centroid of each microsphere ===Relevant Matlab commands===
    3 KB (466 words) - 21:54, 4 January 2013
  • Electronics Mini-Lab
    # Optional: '''In Matlab, use <tt>nlinfit</tt> to fit parameters of a transfer function for each cir # Load the curve into Matlab and plot the ''I-V'' curve
    35 KB (5,891 words) - 18:46, 7 April 2017
  • Intro Electronics Lab Report
    ...or the photodiode at different light levels (including in darkness). Using Matlab (or your preferred plotting program), plot these on the same graph to see h ... that can model the circuit, and fit the model to your data, preferably in Matlab or Python rather than excel, to see whether the model makes sense. The four
    1 KB (183 words) - 20:21, 11 January 2013
  • Bode plots and frequency response
    ==MATLAB code== The transfer function plots were generated by the Matlab script [[wikibodeplots.m]].
    4 KB (747 words) - 21:15, 5 April 2013
  • Optical Microscopy Part 2: Fluorescence Microscopy
    ...your images in a format that preserves all 12 bits. We recommend using the MATLAB <tt>save</tt> command to save data in a .mat file so you can reanalyze it l #* Use MATLAB to generate a histogram of to be certain that the image is exposed correctl
    20 KB (3,262 words) - 22:06, 14 August 2017
  • DNA Melting: Using the Matlab DNAMelter GUI
    ...py in your directory of choice, double click that copy to open the code in Matlab, then run the code via the Run button. ...ton to save to a file. The data will be tab-delimited and can be read into Matlab with the <code>load</code> command.
    4 KB (644 words) - 21:08, 29 August 2013
  • DNA Melting II: Using the Matlab DNALockIn GUI
    ...py in your directory of choice, double click that copy to open the code in Matlab, then run the code via the Run button. ...usly saves data to the file "DNALockInRunningData.txt". Before restarting MATLAB and/or DNALockIn, copy this file to another name to save the data.
    9 KB (1,422 words) - 23:19, 19 November 2013
  • Optical microscopy lab wiki pages
    * [[MATLAB: Estimating resolution from a PSF slide image]] * [[Matlab: Scalebars]]
    534 B (60 words) - 12:49, 5 September 2018
  • MATLAB: Estimating resolution from a PSF slide image
    [[Category:Matlab]] ...age:Synthetic PSF Image.png|thumb|right|Synthetic PSF image generated with MATLAB.]]
    17 KB (1,769 words) - 14:21, 30 September 2017
  • Error analysis
    ...h a standard deviation of 2x10<sup>-5</sup> m. Write a computer program in MATLAB or another language of your choosing to simulate the detector's output for
    24 KB (3,757 words) - 14:57, 3 September 2018
  • DNA Melting: Using the LockIn DNAMelter GUI
    The MATLAB function <code>LockInGUI</code> runs the LockIn DNA Melting GUI. The LockI The data will be tab-delimited and can be read into Matlab with the load command. The data will be in 3 columns of time, temperature,
    10 KB (1,467 words) - 00:16, 8 November 2017
  • DNA Melting: Using the Basic DNAMelter GUI
    The MATLAB function <code>BasicMelter</code> located in the MATLAB directory runs the Basic DNA Melting GUI ("Graphical User Interface"). Typ The data will be tab-delimited and can be read into Matlab with the <code>load</code> command. The data will be in 3 columns of time,
    5 KB (719 words) - 23:46, 7 November 2017
  • Save the curve to a USB memory stick
    In MATLAB use the xlsread function to load the data, e.g.,
    454 B (63 words) - 22:31, 24 March 2014
  • Optics Bootcamp
    * Launch MATLAB * Save your image to the MATLAB workspace
    28 KB (4,857 words) - 20:09, 31 July 2017
  • Matlab: Scalebars
    [[Category:Matlab]] ...data only, with the scalar overlaid. Unfortunately the getimage command in Matlab does not retain the rectangle or text data, so we (or you) will have to be
    3 KB (414 words) - 20:37, 31 January 2019
  • Estimating second order system parameters from noise power spectra using nonlinear regression
    ...sociated frequency bin vector <math>f</math> from a time series. Like many MATLAB functions, there are several different ways to invoke <tt>pwelch</tt>. Even The MATLAB function defined below models the power spectrum of a second-order system e
    30 KB (4,815 words) - 21:47, 27 December 2015
  • 20.109(S08):Data analysis (Day7)
    ===Part 2: Improved estimate of K<sub>D</sub> using <small>MATLAB</small> modeling=== # Double-click on the <small>MATLAB</small> icon to start up this software.
    14 KB (2,336 words) - 14:25, 5 June 2015
  • 20.109(S07): Calcium signaling in vivo
    ... handout v2.doc| this document]] which includes all the directions and the MatLab program that follows. ...on your computer. When the program opens, you will see a window titled “MATLAB” that looks like this:
    14 KB (2,275 words) - 15:31, 15 June 2015
  • 20.109(S09):Data analysis (Day8)
    ===Part 2: Improved estimate of K<sub>D</sub> using <small>MATLAB</small> modeling=== ...ownloads'' folder under your username. Move them to the username/Documents/MATLAB folder on your PC.
    14 KB (2,303 words) - 19:33, 28 July 2015
  • 20.109(S13):Assess protein function (Day8)
    ...Second, you will take the average processed values and plug them into some MATLAB code that will more precisely tell you the affinity and cooperativity of ea ===Part 2: Improved estimate of K<sub>D</sub> using <small>MATLAB</small> modeling===
    16 KB (2,718 words) - 13:48, 29 July 2015
  • 20.109(F14)
    Data can be beautiful. Our cover image ('Protein Supernova') was created in Matlab by Dr. Joel Wagner, a former Course 20 PhD graduate student who found that
    3 KB (481 words) - 14:02, 29 July 2015
  • 20.109(F14): Mod 1 Day 6 Lipofection and CometChip Analysis
    ... app for that -- well, not quite the app you were thinking, but there is a Matlab GUI for that -- and you'll be analyzing some data from that GUI today to pr
    14 KB (2,345 words) - 14:02, 29 July 2015
  • 20.109(F14): Mod 1 Day 6 Lipofection and paper discussion
    #''Here is where I need to decide how much Matlab (if any) analysis will be done by the students''
    11 KB (1,850 words) - 14:02, 29 July 2015
  • 20.109(F14): Mod 1 Day 6 Lipofection
    ... app for that -- well, not quite the app you were thinking, but there is a Matlab GUI for that -- and you'll be analyzing some data from that GUI today to pr
    14 KB (2,341 words) - 14:02, 29 July 2015
  • 20.109(S12):Bacterial amplification of DNA (Day3)
    ...Day 7, into the Excel sheet that you make today and quickly move on to the MATLAB analysis. I will hold office hours to assist with the second step, most lik
    17 KB (2,889 words) - 17:30, 29 July 2015
  • 20.109(S12):Assess protein function (Day7)
    ...<sub>D</sub>s and also assess cooperativity. <font color=red>'''The <small>MATLAB</small> code is now up to date.'''</font color> ...ownloads'' folder under your username. Move them to the username/Documents/MATLAB folder on your PC.
    23 KB (3,809 words) - 17:30, 29 July 2015
  • 20.109(F13): Mod 2 Day 7 HTS and Analysis
    ...the data using Excel and then import a properly formatted spreadsheet into Matlab for visualization and calculation. Follow these general guidelines to pre-process your data and get it ready for Matlab analysis:
    9 KB (1,414 words) - 17:33, 29 July 2015
  • 20.109(S10):Data analysis (Day8)
    ===Part 2: Improved estimate of K<sub>D</sub> using <small>MATLAB</small> modeling=== ...ownloads'' folder under your username. Move them to the username/Documents/MATLAB folder on your PC.
    15 KB (2,419 words) - 19:49, 28 July 2015
  • 20.309 Main Page
    *[[Matlab: Scalebars]] * [[MATLAB: Estimating resolution from a PSF slide image]]
    8 KB (887 words) - 20:47, 16 October 2020
  • Review of probability concepts
    ...the normal distribution with <math>\mu=0</math> and <math>\sigma=1</math>. MATLAB functions <tt>rand</tt> and <tt>randn</tt> return pseudorandom values that
    7 KB (1,214 words) - 21:12, 31 January 2019
  • 20.109(F15):Assess protein function (Day7)
    ... you will take the average processed values and plug them into some <small>MATLAB</small> code that will more precisely tell you the affinity and cooperativi ===Part 2: Improved estimate of ''K<sub>d</sub>'' using <small>MATLAB</small> modeling===
    15 KB (2,549 words) - 00:24, 3 November 2015
  • 20.109(F15):Lipofection (Day6)
    ...r that -- well, not quite the app you were thinking, but there is a <small>MATLAB GUI</small> for that -- and you'll be analyzing some data from that GUI tod
    16 KB (2,572 words) - 17:58, 1 October 2015
  • 20.109(S16): Protein engineering summary
    *''Topic'': Differences in data using each MATLAB analysis method. ...for any differences by including details on how the data were generated by MATLAB.
    9 KB (1,392 words) - 20:18, 29 February 2016
  • Temporary Optics Bootcamp
    ==Visualize, capture, and save images in Matlab== * Become familiar with image acquisition and distance measurement using the Matlab software.
    15 KB (2,559 words) - 21:32, 2 February 2016
  • 20.109(S16):Assess protein function (Day8)
    ... you will take the average processed values and plug them into some <small>MATLAB</small> code that will more precisely tell you the affinity and cooperativi ===Part 2: Improved estimate of ''K<sub>d</sub>'' using <small>MATLAB</small> modeling===
    15 KB (2,565 words) - 20:14, 2 March 2016
  • 20.109(F16):Lipofection (Day6)
    ...r that -- well, not quite the app you were thinking, but there is a <small>MATLAB GUI</small> for that -- and you'll be analyzing some data from that GUI tod
    16 KB (2,572 words) - 15:33, 18 May 2016
  • Optical Microscopy Part 3: Resolution, Stability, and Particle Tracking
    ...TLAB: Estimating resolution from a PSF slide image|This page]] has example MATLAB code. ... '''Problem Set 2 will help you with this.''' You may download this set of Matlab files to help you get started: [[File:Matlab_Code_Following_Things_2.zip]].
    16 KB (2,559 words) - 22:47, 15 March 2017
  • Part 3 Combined Report Outline
    <li>Explain the Matlab algorithm used for data analysis.</li>
    5 KB (806 words) - 16:00, 14 March 2017
  • 20.109(F16):Test comet chip loading variables (Day2)
    ...e taken on a Nikon epifluorescence microscope and images were analyzed via Matlab.
    15 KB (2,594 words) - 17:33, 22 September 2016
  • 20.109(F16):Seed cells for immuno-flourescence assay (Day5)
    Documents\ MATLAB\ Fa16 CometChip Analysis\ Data\. <br> #*Find within the "Fa16 CometChip Analysis" subfolder in MATLAB.
    12 KB (2,013 words) - 20:08, 30 September 2016
  • Bode plots
    The transfer function plots were generated by the Matlab script [[wikibodeplots.m]]. Feel free to try it on your own.
    16 KB (2,729 words) - 20:05, 31 July 2017
  • Calculating MSD and Diffusion Coefficients
    [[Category:Matlab]] ...|thumb|right|Example MSD calculation of sum and difference particles using MATLAB.]]
    3 KB (365 words) - 12:21, 10 March 2020
  • Assignment 3, Part 1: visualizing actin with fluorescence contrast
    ...fore saving. Go back and read [[Recording, displaying and saving images in MATLAB|this page]] if you need to refresh your memory. ...sure and gain settings. Each image should have a scale bar (you may find [[Matlab: Scalebars|this page handy]]). State the dimension of the scale bar in the
    15 KB (2,365 words) - 20:25, 25 February 2020
  • Understanding log plots
    ==MATLAB log function== ... of <math>\log_{10}</math>. This is just downright lame and confusing. The MATLAB function <tt>log10()</tt> returns log base 10 (<math> \log_{10} </math>). M
    9 KB (1,683 words) - 13:13, 23 August 2017
  • Using nonlinear regression to create a camera specification sheet
    ...sociated frequency bin vector <math>f</math> from a time series. Like many MATLAB functions, there are several different ways to invoke <tt>pwelch</tt>. Even The MATLAB function defined below models the power spectrum of a second-order system e
    30 KB (4,871 words) - 20:23, 29 August 2018
  • Assignment 2: fluorescence microscopy
    ...mu;m beads and their corresponding dark and reference images), include the MATLAB code you used to calculate the flat-field correction.
    3 KB (531 words) - 18:23, 14 February 2020
  • Assignment 5 Overview
    Include any MATLAB code you've written as an appendix to your assignment. * [[Matlab: Scalebars]]
    3 KB (426 words) - 13:34, 23 March 2020
  • Assignment 1, Part 4: Measuring magnification and bead size
    ...lay images by reading through [[Recording, displaying and saving images in MATLAB|these instructions]]. ... other programs (Did you read [[Recording, displaying and saving images in MATLAB| the instructions??]]).
    8 KB (1,209 words) - 04:16, 14 February 2020
  • Assignment 1, Part 2: Optics bootcamp
    * Launch MATLAB. * The tool you will use to acquire images is implemented as a MATLAB ''object'' of type <tt>UsefulImageAcquisition</tt>. Create an ''instance''
    20 KB (3,371 words) - 06:40, 31 January 2020
  • Assignment 5, Part 2: live cell particle tracking of endocytosed beads
    Include any MATLAB code you've written as an appendix to your assignment.
    4 KB (742 words) - 18:01, 30 March 2020
  • Assignment 5, Part 1: viscosity and diffusivity in glycerol-water mixtures
    ...ull-field, three minute move takes up about 4 GB, which is certain to push MATLAB over the edge.)
    3 KB (542 words) - 17:18, 3 March 2020
  • Assignment 4: finding and measuring things
    ...s. The instructors are happy to work alongside you to help you get through MATLAB's many curiosities and frustrations.
    2 KB (244 words) - 14:49, 17 September 2018
  • Assignment 7, Part 2: measure temperature and fluorescence
    Run <code>BasicMelter</code> in MATLAB to collect data from your instrument. ...te the data to a file. The data will be tab-delimited and can be read into Matlab with the <code>load</code> command.
    22 KB (3,650 words) - 17:42, 6 April 2018
  • Assignment 3 Overview
    ... single set of axes for comparison. (Use the <tt>improfile</tt> command in MATLAB.)
    3 KB (377 words) - 14:08, 1 October 2018
  • Recording, displaying and saving images in MATLAB
    foo.Initialize</tt>" into the MATLAB console window.</caption>]] <ul> <li> Launch MATLAB and in the command window type: </li>
    5 KB (834 words) - 18:41, 31 January 2019
  • Assignment 6 Overview
    ...ng circuit diagram for each of the four circuits A through D. Optional: In Matlab, use <tt>nlinfit</tt> to fit parameters of a transfer function for each cir
    3 KB (432 words) - 12:51, 14 October 2018
  • Assignment 6, Part 3: Identifying unknown filter circuits
    ...ng circuit diagram for each of the four circuits A through D. Optional: In Matlab, use <tt>nlinfit</tt> to fit parameters of a transfer function for each cir
    2 KB (330 words) - 17:07, 2 October 2018
  • Assignment 7, Part 1: op amp golden rules questions
    ..., simulate a DNA melting curve, plotting f ''vs.'' T. Feel free to use the MATLAB functions given on the wiki page:<br />
    6 KB (955 words) - 21:44, 3 April 2018
  • Assignment 9, Part 1: model function
    ...m <math>H(\omega)=\frac{1}{\tau s+1}=\frac{1}{\tau j \omega+1}</math>. The MATLAB function [http://www.mathworks.com/help/control/ref/tf.html tf] constructs The SimulateLowPass MATLAB function below uses <tt>lsim</tt> to produce the simulated output of a low-
    12 KB (1,969 words) - 15:29, 14 November 2017
  • Assignment 9, Part 2: Simulating DNA melting data and testing the model function
    ... bit, then cooled it back down to room temperature. Let's simulate this in MATLAB: ...ou must adapt the model function you wrote to be suitable for use with the Matlab <tt>nlinfit</tt> function (or other fitting routines). In order for the fun
    9 KB (1,403 words) - 21:02, 17 April 2018
  • 20.109(F17):Examine sub-nuclear foci abundance to measure DNA damage (Day6)
    ...ted CometChip and one for the buffer control CometChip, into the Documents\MATLAB\CometChip Analysis directory of the lab computer. <br> ...the same well into a stacked image and rename the files for the subsequent Matlab script to recognize them.
    15 KB (2,329 words) - 15:22, 4 October 2017
  • Assignment 2 Part 1: Noise in images
    ...allenge in many applications. In this part of the assignment, you will use MATLAB or another computing environment of your choice to simulate the major sourc ...mputer. The first thing you need is a source of random numbers. So fire up MATLAB or any other software environment you like (and stop whining about it). Or
    24 KB (3,859 words) - 20:38, 18 February 2020
  • Assignment 2 Part 3: Build an epi-illuminator for your microscope
    ...>save</tt> command to save data as a .mat file that you can load back into MATLAB later. This makes it easy to reanalyze your images if necessary. You could #* Use MATLAB to generate a histogram of each image to be certain that the image is expos
    13 KB (2,282 words) - 19:21, 21 February 2020
  • Assignment 4 part 1: Make a fake image
    Remember that MATLAB functions have to be stored in a file that has the same name as the functio ...akes sense to come up with a good way to represent ensembles of particles. MATLAB has a two built-in data types that could be useful representations of multi
    10 KB (1,374 words) - 22:31, 4 March 2020
  • Assignment 4 part 2: Measure resolution
    [[Category:Matlab]] ...ight want to think a bit about how to choose the best threshold value. The MATLAB Image Processing Toolbox includes a global threshold function called <tt>im
    24 KB (3,552 words) - 19:42, 28 February 2020
  • Assignment 4 part 3: Track microspheres over time
    ...sition vs. the x-centroid position for two or more particles. Remember, in MATLAB, you can isolate the coordinates of particle number 5, for example, by usin
    10 KB (1,344 words) - 19:58, 28 February 2020
  • 20.109(S18):Confirm ligand binding using differential scanning fluorimetry assay (Day6)
    #*You may use this MATLAB script ([[media: ApparentKd2.m|ApparentKd.m]]) to help fit the Tm vs. Rapam ...amycin concentrations by typing ''RapConc = [A, B, C, D, E, etc.]'' at the MATLAB command prompt, where A, B, C are the various Rapamycin concentrations in u
    11 KB (1,775 words) - 13:16, 8 March 2018
  • 20.109(F18):Analyze genomic instability experiment data and treat cells for sub-nuclear foci assay (Day5)
    ...eate (or copy and paste) the folder of your team images into the Documents\MATLAB\CometChip Analysis directory of the lab computer. <br> ...the same well into a stacked image and rename the files for the subsequent Matlab script to recognize them.
    10 KB (1,556 words) - 18:29, 27 September 2018
  • Electronics boot camp lab part 1
    ... it is possible to find best-fit values for the transfer function. Use the MATLAB function <tt>tfest</tt> (or another function of your choice) to find an est #* Use the MATLAB function <tt>frd</tt> to create a "frequency-response data" object. The <tt
    31 KB (5,193 words) - 17:21, 23 January 2020
  • Assignment 8, Part 3: add flow control and test your device
    ...ed to switch on and off the solenoid valve at a particular rate. Let's get MATLAB to do the work for us by interfacing the valves with a lab computer. While <li> In MATLAB, initialize the OsmoticShocker
    14 KB (2,339 words) - 22:11, 7 November 2019
  • Assignment 9 Overview: Analyzing yeast images
    ...\zeta</math>. A hand-drawn plot is fine, but you should probably look into MATLAB's <tt>step</tt> function.
    3 KB (385 words) - 21:03, 14 November 2019
  • Assignment 9, Part 1: Analyze two-color yeast images
    In MATLAB, display the contents of the structure in the data file: ...elation coefficients between these two intensity vectors (<tt>corr</tt> in MATLAB). The following helper function may be useful.
    10 KB (1,426 words) - 16:08, 12 November 2019
  • Assignment 10, Part 1: Measuring the osmotic shock response of yeast
    # In MATLAB, enter the ''Fa2019 Assignment 10 Movies'' dropbox folder, making it your w
    16 KB (2,644 words) - 21:39, 21 November 2019
  • 20.109(S19):Confirm ligand binding using differential scanning fluorimetry assay (Day6)
    #*You may use this MATLAB script ([[media: ApparentKd2.m|ApparentKd.m]]) to help fit the Tm vs. Rapam ...amycin concentrations by typing ''RapConc = [A, B, C, D, E, etc.]'' at the MATLAB command prompt, where A, B, C are the various Rapamycin concentrations in u
    10 KB (1,695 words) - 20:09, 5 March 2019
  • 20.109(F19):Complete CometChip experiment (Day5)
    ...structors. You will download your images directly into the Data folder in MATLAB, then run the code as shown by Dushan.
    12 KB (2,017 words) - 13:07, 26 September 2019
  • 20.109(F19):Image CometChip (Day6)
    ...eate (or copy and paste) the folder of your team images into the Documents\MATLAB\CometChip Analysis directory of the lab computer. <br> ...the same well into a stacked image and rename the files for the subsequent Matlab script to recognize them.
    10 KB (1,633 words) - 14:08, 1 October 2019
  • Spring 2020 Assignment 9
    ...f 1/4, 3/4, 5/4, 10/4, and 17/4. You may generate your plot by hand or use MATLAB. ...\zeta</math>. A hand-drawn plot is fine, but you should probably look into MATLAB's <tt>step</tt> function.</li>
    11 KB (1,616 words) - 16:42, 30 April 2020
  • Spring 2020 assignment 10
    Load some data into MATLAB: ...elation coefficients between these two intensity vectors (<tt>corr</tt> in MATLAB). The following helper function may be useful.
    8 KB (1,160 words) - 18:43, 26 April 2020
  • Spring 2020 Assignment 10
    ...2010?dl=0&subfolder_nav_tracking=1 course dropbox], and load the data into matlab. You should see that this file contains two variables: {{Template:Assignment Turn In|message = Turn in all your MATLAB code in pdf format. No need to include functions that you used but did not
    4 KB (653 words) - 13:57, 6 May 2020
  • 20.109(F20):M1D6
    ...d use the MIT software license for free access. Instructions below are for Matlab online. <br> ...the same well into a stacked image and rename the files for the subsequent Matlab script to recognize them.
    13 KB (2,151 words) - 14:28, 14 September 2020
  • 20.109(S21):M1D7
    ...thmic titration binding curves and calculate apparent <math>K_d</math> via Matlab === ...e median fluorescent intensity of our flow cytometry titration we will use Matlab to carry out the statistical analysis and fit a curve to the data.
    15 KB (2,498 words) - 17:47, 17 March 2021
  • 20.109(S21):M3D3
    ...d form. Second, you will take the average processed values and use <small>MATLAB</small> code that will more precisely determine the affinity and cooperativ ...will normalize the data to prepare for more advanced analysis using <small>MATLAB</small>.
    18 KB (3,041 words) - 15:12, 4 May 2021
  • 20.109(F21):M1D6
    ... server found here: [https://www.mathworks.com/products/matlab-online.html Matlab Online]. ...d use the MIT software license for free access. Instructions below are for Matlab online. <br>
    12 KB (2,055 words) - 19:24, 30 September 2021
  • 20.109(F22):M1D6
    ... server found here: [https://www.mathworks.com/products/matlab-online.html Matlab Online]. ...d use the MIT software license for free access. Instructions below are for Matlab online. <br>
    12 KB (1,989 words) - 19:10, 4 October 2022

View (previous 500 | next 500) (20 | 50 | 100 | 250 | 500)

Retrieved from "http://engineerbiology.org/wiki/Special:Search"