Difference between revisions of "20.109(F07): Fall 2007 schedule"
From Course Wiki
MAXINE JONAS (Talk | contribs) m (53 revisions: Transfer 20.109(F07) to HostGator) |
|||
(21 intermediate revisions by 2 users not shown) | |||
Line 15: | Line 15: | ||
| | | | ||
| Thur Sept 6 | | Thur Sept 6 | ||
− | | [ | + | | [http://openwetware.org/wiki/Natalie_Kuldell | NK] |
− | | [ | + | | [http://openwetware.org/wiki/User:AliceLo | AL] |
| [[20.109(F07):Lab tour | Orientation]] | | [[20.109(F07):Lab tour | Orientation]] | ||
| notes from the first lecture are [[Media:Orientation(F07) hndout.pdf| here]] | | notes from the first lecture are [[Media:Orientation(F07) hndout.pdf| here]] | ||
Line 25: | Line 25: | ||
| 1 | | 1 | ||
| Tue Sept 11 | | Tue Sept 11 | ||
− | | [ | + | | [http://openwetware.org/wiki/Drew_Endy | DE] |
− | | [ | + | | [http://openwetware.org/wiki/Laure-Anne_Ventouras | LAV] |
− | | [ | + | | [http://openwetware.org/wiki/20.109(F07):Start-up_genome_engineering | Start-up genome engineering] |
| PDF copy of notes from discussion are [[Media:20109F7M1L1.pdf| here]] | | PDF copy of notes from discussion are [[Media:20109F7M1L1.pdf| here]] | ||
|-- | |-- | ||
Line 33: | Line 33: | ||
| 2 | | 2 | ||
| Thur Sept 13 | | Thur Sept 13 | ||
− | | [ | + | | [http://openwetware.org/wiki/Drew_Endy | DE] |
− | | [ | + | | [http://openwetware.org/wiki/Laure-Anne_Ventouras | LAV] |
− | | [ | + | | [http://openwetware.org/wiki/20.109(F07):_Agarose_gel_electrophoresis | Agarose gel electrophoresis] |
| PDF copy of notes from discussion are [[Media:20109F7M1L2.pdf| here]] | | PDF copy of notes from discussion are [[Media:20109F7M1L2.pdf| here]] | ||
|-- | |-- | ||
Line 41: | Line 41: | ||
| 3 | | 3 | ||
| Tue Sept 18 | | Tue Sept 18 | ||
− | | [ | + | | [http://openwetware.org/wiki/Drew_Endy | DE] |
− | | [ | + | | [http://openwetware.org/wiki/Laure-Anne_Ventouras | LAV] |
| [[20.109(F07): DNA ligation and bacterial transformation| DNA ligation and bacterial transformation]] | | [[20.109(F07): DNA ligation and bacterial transformation| DNA ligation and bacterial transformation]] | ||
| PDF copy of notes from discussion are [[Media:20109F7M1L3.pdf| here]] | | PDF copy of notes from discussion are [[Media:20109F7M1L3.pdf| here]] | ||
− | |||
|-- | |-- | ||
| 1 | | 1 | ||
| 4 | | 4 | ||
| Thur Sept 20 | | Thur Sept 20 | ||
− | | [ | + | | [http://openwetware.org/wiki/Drew_Endy | DE] |
− | | [ | + | | [http://openwetware.org/wiki/Laure-Anne_Ventouras | LAV] |
− | | [ | + | | [http://openwetware.org/wiki/20.109(F07):_Examine_candidate_clones | Examine candidate clones] |
− | | | + | | PDF copy of slides from discussion are [[Media:20109F07M1L4st.pdf| here]] |
|-- | |-- | ||
| 1 | | 1 | ||
| 5 | | 5 | ||
| Tue Sept 25 | | Tue Sept 25 | ||
− | | [ | + | | [http://openwetware.org/wiki/Drew_Endy | DE] |
− | | [ | + | | [http://openwetware.org/wiki/Laure-Anne_Ventouras | LAV] |
| [[20.109(F07): M13.1| M13.1]] | | [[20.109(F07): M13.1| M13.1]] | ||
− | | In lab we will hear from [ | + | | PDF copy of slides from discussion are [[Media:20109F07M1L5.pdf| here]] (In lab we will hear from [http://openwetware.org/wiki/User:Atissa | the oral presenation] instructor) |
|-- | |-- | ||
| 1 | | 1 | ||
| 6 | | 6 | ||
| Thur Sept 27 | | Thur Sept 27 | ||
− | | [ | + | | [http://openwetware.org/wiki/Drew_Endy | DE] |
− | | [ | + | | [http://openwetware.org/wiki/Laure-Anne_Ventouras | LAV] |
| [[20.109(F07): Western analysis| Western analysis]] | | [[20.109(F07): Western analysis| Western analysis]] | ||
− | | | + | | PDF copy of slides from discussion are [[Media:20109F07M1L6.pdf | here]] |
|-- | |-- | ||
| 1 | | 1 | ||
| 7 | | 7 | ||
| Tue Oct 2 | | Tue Oct 2 | ||
− | | [ | + | | [http://openwetware.org/wiki/Drew_Endy | DE] |
− | | [ | + | | [http://openwetware.org/wiki/Laure-Anne_Ventouras | LAV] |
− | | [ | + | | [http://openwetware.org/wiki/20.109(F07):_Probe_western | Probe western] |
− | | the first draft of your [[20.109(F07): Genome engineering assessment| genome engineering portfolio]] <b> Parts 1, 2, and 4 only </b> is due before you arrive in lab. During lab there will be a lecture from the [http://web.mit.edu/environment/ehs/about_ehs.html| EHS representative] | + | | the first draft of your [[20.109(F07): Genome engineering assessment| genome engineering portfolio]] <b> Parts 1, 2, and 4 only </b> is due before you arrive in lab. During lab there will be a lecture from the [http://web.mit.edu/environment/ehs/about_ehs.html| EHS representative]. PDF copy of slides from discussion are [[Media:20109100207.pdf | here]]. |
|-- | |-- | ||
| 1 | | 1 | ||
| 8 | | 8 | ||
| Thur Oct 4 | | Thur Oct 4 | ||
− | | [ | + | | [http://openwetware.org/wiki/Drew_Endy | DE] |
− | | [ | + | | [http://openwetware.org/wiki/Laure-Anne_Ventouras | LAV] |
| [[20.109(F07): Module 1 oral presentations| Oral Presentations]] | | [[20.109(F07): Module 1 oral presentations| Oral Presentations]] | ||
| the first draft of your [[20.109(F07): Genome engineering assessment| genome engineering portfolio]] <b> Part 3 only </b> is due before you arrive in lab. | | the first draft of your [[20.109(F07): Genome engineering assessment| genome engineering portfolio]] <b> Part 3 only </b> is due before you arrive in lab. | ||
Line 99: | Line 98: | ||
| 1 | | 1 | ||
| Thur Oct 11 | | Thur Oct 11 | ||
− | | [ | + | | [http://openwetware.org/wiki/Natalie_Kuldell | NK] |
− | | [ | + | | [http://openwetware.org/wiki/User:AliceLo | AL] |
| [[20.109(F07): siRNA design| siRNA design and start-up in cell culture]] | | [[20.109(F07): siRNA design| siRNA design and start-up in cell culture]] | ||
− | | | + | | PDF copy of lecture slides are [[Media:109(F07)M2D1 handout.pdf| here]] |
|-- | |-- | ||
| 2 | | 2 | ||
| 2 | | 2 | ||
| Tue Oct 16 | | Tue Oct 16 | ||
− | | [ | + | | [http://openwetware.org/wiki/Natalie_Kuldell | NK] |
− | | [ | + | | [http://openwetware.org/wiki/User:AliceLo | AL] |
| [[20.109(F07): Transfection| Transfection]] | | [[20.109(F07): Transfection| Transfection]] | ||
− | | | + | | PDF copy of lecture slides are [[Media:109(F07) M2D2handout.pdf| here]] |
|-- | |-- | ||
| 2 | | 2 | ||
| 3 | | 3 | ||
| Thur Oct 18 | | Thur Oct 18 | ||
− | | [ | + | | [http://openwetware.org/wiki/Natalie_Kuldell | NK] |
− | | [ | + | | [http://openwetware.org/wiki/User:AliceLo | AL] |
| [[20.109(F07): Luciferase assays and RNA prep| Luciferase assays and RNA prep]] | | [[20.109(F07): Luciferase assays and RNA prep| Luciferase assays and RNA prep]] | ||
− | | | + | | PDF copy of lecture slides are [[Media:109(F07) M2D3handout.pdf| here]] |
|-- | |-- | ||
| 2 | | 2 | ||
| 4 | | 4 | ||
| Tues Oct 23 | | Tues Oct 23 | ||
− | | [ | + | | [http://openwetware.org/wiki/Natalie_Kuldell | NK] |
− | | [ | + | | [http://openwetware.org/wiki/User:AliceLo | AL] |
| [[20.109(F07): Journal article discussion| Journal article discussion]] | | [[20.109(F07): Journal article discussion| Journal article discussion]] | ||
− | | Guest lecture: [ | + | | Guest lecture: [http://openwetware.org/wiki/User:Nlerner | NL] from the writing program. <br> PDF of his slides are on his user page as well as [[Media:20.109_F07.pdf|here (overview)]] and |
+ | [[Media:Guide_to_Scientific_Writing.pdf|here (Guide to Scientific Writing)]] | ||
|- | |- | ||
| 2 | | 2 | ||
| 5 | | 5 | ||
| Thur Oct 25 | | Thur Oct 25 | ||
− | | [ | + | | [http://openwetware.org/wiki/Natalie_Kuldell | NK] |
− | | [ | + | | [http://openwetware.org/wiki/User:AliceLo | AL] |
| [[20.109(F07): cDNA synthesis and microarray| cDNA synthesis and microarray]] | | [[20.109(F07): cDNA synthesis and microarray| cDNA synthesis and microarray]] | ||
− | | | + | | PDF copy of lecture slides are [[Media:109(F07) M2D5handout.pdf| here]] |
|-- | |-- | ||
| 2 | | 2 | ||
| 6 | | 6 | ||
| Tue Oct 30 | | Tue Oct 30 | ||
− | | [ | + | | [http://openwetware.org/wiki/Natalie_Kuldell | NK] |
− | | [ | + | | [http://openwetware.org/wiki/User:AliceLo | AL] |
| [[20.109(F07): Microarray data analysis| Microarray data analysis]] | | [[20.109(F07): Microarray data analysis| Microarray data analysis]] | ||
− | | guest lecture by [http://csbi.mit.edu/website/members/Members/RebeccaFry Rebecca Fry] | + | | guest lecture by [http://csbi.mit.edu/website/members/Members/RebeccaFry Rebecca Fry]<br>PDF of her lecture slides are [[Media:Dataanalysis2007 oct.pdf| here]] |
|-- | |-- | ||
| 2 | | 2 | ||
| 7 | | 7 | ||
| Thur Nov 1 | | Thur Nov 1 | ||
− | | [ | + | | [http://openwetware.org/wiki/Natalie_Kuldell | NK] |
− | | [ | + | | [http://openwetware.org/wiki/User:AliceLo | AL] |
| Lecture on high throughput technologies;[[20.109(F07): Mod 2 Day 7| '''no lab''']] | | Lecture on high throughput technologies;[[20.109(F07): Mod 2 Day 7| '''no lab''']] | ||
− | | First draft of your [[20.109(F07): Expression engineering report| expression engineering report]] is due by 5PM on the day you meet for lab | + | | First draft of your [[20.109(F07): Expression engineering report| expression engineering report]] is due by 5PM on the day you meet for lab.<br> PDF copy of lecture slides are [[Media:109(F07) M2D7handout.pdf| here]] |
|-- | |-- | ||
| 2 | | 2 | ||
| 8 | | 8 | ||
| Tue Nov 6 | | Tue Nov 6 | ||
− | | [ | + | | [http://openwetware.org/wiki/Natalie_Kuldell | NK] |
− | | [ | + | | [http://openwetware.org/wiki/User:AliceLo | AL] |
| [[20.109(F07): Module 2 oral presentations| Oral presentations]] | | [[20.109(F07): Module 2 oral presentations| Oral presentations]] | ||
− | | | + | | No lecture 11.06<br>Presentations will be in 56-302 for November 6th, <br>56-402 for November 7th |
|-- | |-- | ||
| colspan="7" | | | colspan="7" | | ||
Line 165: | Line 165: | ||
| 1 | | 1 | ||
| Thur Nov 8 | | Thur Nov 8 | ||
− | | [ | + | | [http://openwetware.org/wiki/User:Abelcher | AB] |
− | | [ | + | | [http://openwetware.org/wiki/User:Barbero | RB] |
| [[20.109(F07): Growth of phage materials| Growth of phage materials]] | | [[20.109(F07): Growth of phage materials| Growth of phage materials]] | ||
| | | | ||
Line 173: | Line 173: | ||
| 2 | | 2 | ||
| Tue Nov 13 | | Tue Nov 13 | ||
− | | [ | + | | [http://openwetware.org/wiki/User:Abelcher | AB] |
− | | [ | + | | [http://openwetware.org/wiki/User:Barbero | RB] |
− | | [ | + | | [http://openwetware.org/wiki/20.109(F07):_Phage_nanowires | Phage nanowires] |
− | | | + | | PDF copy of Atissa Bunuazizi's lecture is [[Media:Mod3 teampresentations.pdf| here]] |
|-- | |-- | ||
| 3 | | 3 | ||
| 3 | | 3 | ||
| Thur Nov 15 | | Thur Nov 15 | ||
− | | [ | + | | [http://openwetware.org/wiki/User:Abelcher | AB] |
− | | [ | + | | [http://openwetware.org/wiki/User:Barbero | RB] |
| [[20.109(F07): Transmission electron microscopy| TEM]] | | [[20.109(F07): Transmission electron microscopy| TEM]] | ||
− | | | + | | PDF copy of Yoon Sung Nam's lecture is [[Media:2007-11-15 20.109 lecture.pdf| here]] |
|-- | |-- | ||
| colspan="7" | | | colspan="7" | | ||
Line 192: | Line 192: | ||
| | | | ||
! colspan="4" | Thanksgiving Break Nov 22-33 | ! colspan="4" | Thanksgiving Break Nov 22-33 | ||
− | | '''No lab all week''' | + | | '''No lab or lecture all week''' |
|-- | |-- | ||
| colspan="7" | | | colspan="7" | | ||
Line 200: | Line 200: | ||
| 4 | | 4 | ||
| Tue Nov 27 | | Tue Nov 27 | ||
− | | [ | + | | [http://openwetware.org/wiki/User:Abelcher | AB] |
− | | [ | + | | [http://openwetware.org/wiki/User:Barbero | RB] |
| [[20.109 (F07): Phage by design| Phage by design]] | | [[20.109 (F07): Phage by design| Phage by design]] | ||
| | | | ||
Line 208: | Line 208: | ||
| 5 | | 5 | ||
| Thur Nov 29 | | Thur Nov 29 | ||
− | | [ | + | | [http://openwetware.org/wiki/User:Abelcher | AB] |
− | | [ | + | | [http://openwetware.org/wiki/User:Barbero | RB] |
| [[20.109(F07): Phage by design, pt2| Phage by design, pt 2]] | | [[20.109(F07): Phage by design, pt2| Phage by design, pt 2]] | ||
| | | | ||
Line 216: | Line 216: | ||
| 6 | | 6 | ||
| Tue Dec 4 | | Tue Dec 4 | ||
− | | [ | + | | [http://openwetware.org/wiki/User:Abelcher | AB] |
− | | [ | + | | [http://openwetware.org/wiki/User:Barbero | RB] |
− | | | + | | [[20.109(F07): ECD assembly| ECD assembly]] |
| | | | ||
|-- | |-- | ||
Line 224: | Line 224: | ||
| 7 | | 7 | ||
| Thur Dec 6 | | Thur Dec 6 | ||
− | | [ | + | | [http://openwetware.org/wiki/User:Abelcher | AB] |
− | | [ | + | | [http://openwetware.org/wiki/User:Barbero | RB] |
− | | | + | | [[20.109(F07): Module 3 oral presentations| Oral presentations]] |
− | | | + | | 56-302 on Thurs, December 6th <br> 56-402 on Friday, December 7th |
|-- | |-- | ||
| 3 | | 3 | ||
| 8 | | 8 | ||
| Tue Dec 11 | | Tue Dec 11 | ||
− | | [ | + | | [http://openwetware.org/wiki/User:Abelcher | AB] |
− | | [ | + | | [http://openwetware.org/wiki/User:Barbero | RB] |
− | | | + | | end of term celebration... |
− | | | + | | Lecture, no lab, for class evaluations then lunch from noon-1:30 PM, 32-G449 |
|} | |} | ||
</div> | </div> |
Latest revision as of 15:54, 15 June 2015
MODULE | DAY | DATE | LECTURER | TA | LAB | note |
Thur Sept 6 | NK] | AL] | Orientation | notes from the first lecture are here | ||
1 | 1 | Tue Sept 11 | DE] | LAV] | Start-up genome engineering] | PDF copy of notes from discussion are here |
1 | 2 | Thur Sept 13 | DE] | LAV] | Agarose gel electrophoresis] | PDF copy of notes from discussion are here |
1 | 3 | Tue Sept 18 | DE] | LAV] | DNA ligation and bacterial transformation | PDF copy of notes from discussion are here |
1 | 4 | Thur Sept 20 | DE] | LAV] | Examine candidate clones] | PDF copy of slides from discussion are here |
1 | 5 | Tue Sept 25 | DE] | LAV] | M13.1 | PDF copy of slides from discussion are here (In lab we will hear from | the oral presenation instructor) |
1 | 6 | Thur Sept 27 | DE] | LAV] | Western analysis | PDF copy of slides from discussion are here |
1 | 7 | Tue Oct 2 | DE] | LAV] | Probe western] | the first draft of your genome engineering portfolio Parts 1, 2, and 4 only is due before you arrive in lab. During lab there will be a lecture from the EHS representative. PDF copy of slides from discussion are here. |
1 | 8 | Thur Oct 4 | DE] | LAV] | Oral Presentations | the first draft of your genome engineering portfolio Part 3 only is due before you arrive in lab. |
Columbus Day Break Oct 8,9 | No lab Tuesday and Wednesday | |||||
---|---|---|---|---|---|---|
2 | 1 | Thur Oct 11 | NK] | AL] | siRNA design and start-up in cell culture | PDF copy of lecture slides are here |
2 | 2 | Tue Oct 16 | NK] | AL] | Transfection | PDF copy of lecture slides are here |
2 | 3 | Thur Oct 18 | NK] | AL] | Luciferase assays and RNA prep | PDF copy of lecture slides are here |
2 | 4 | Tues Oct 23 | NK] | AL] | Journal article discussion | NL] from the writing program. PDF of his slides are on his user page as well as here (overview) and |
2 | 5 | Thur Oct 25 | NK] | AL] | cDNA synthesis and microarray | PDF copy of lecture slides are here |
2 | 6 | Tue Oct 30 | NK] | AL] | Microarray data analysis | guest lecture by Rebecca Fry PDF of her lecture slides are here |
2 | 7 | Thur Nov 1 | NK] | AL] | Lecture on high throughput technologies; no lab | First draft of your expression engineering report is due by 5PM on the day you meet for lab. PDF copy of lecture slides are here |
2 | 8 | Tue Nov 6 | NK] | AL] | Oral presentations | No lecture 11.06 Presentations will be in 56-302 for November 6th, 56-402 for November 7th |
3 | 1 | Thur Nov 8 | AB] | RB] | Growth of phage materials | |
3 | 2 | Tue Nov 13 | AB] | RB] | Phage nanowires] | PDF copy of Atissa Bunuazizi's lecture is here |
3 | 3 | Thur Nov 15 | AB] | RB] | TEM | PDF copy of Yoon Sung Nam's lecture is here |
Thanksgiving Break Nov 22-33 | No lab or lecture all week | |||||
3 | 4 | Tue Nov 27 | AB] | RB] | Phage by design | |
3 | 5 | Thur Nov 29 | AB] | RB] | Phage by design, pt 2 | |
3 | 6 | Tue Dec 4 | AB] | RB] | ECD assembly | |
3 | 7 | Thur Dec 6 | AB] | RB] | Oral presentations | 56-302 on Thurs, December 6th 56-402 on Friday, December 7th |
3 | 8 | Tue Dec 11 | AB] | RB] | end of term celebration... | Lecture, no lab, for class evaluations then lunch from noon-1:30 PM, 32-G449 |