20.109(F19): Prep notes for M1

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20.109(F19): Laboratory Fundamentals of Biological Engineering

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Fall 2019 schedule        FYI        Assignments        Homework        Class data        Communication
       1. Measuring genomic instability        2. Modulating metabolism        3. Testing chemical probes              


M1D1

48 hr preceding laboratory:

in tissue culture room (per team):

  • 1 fresh 12-well plate
  • 5.5 mL PBS
  • 2.5 mL trypsin
  • 35 mL media
  • not aliquoted: trypan blue

in main lab (per team):

  • none

M1D2

in tissue culture room (per team):

  • 135 μL 12 mM MMS
  • 8 μL 100 mM As
  • 45 mL PBS
  • 40 mL media
  • not aliquoted: EdU

in main lab (per team):

  • not aliquoted: NMP stock, 1X PBS, gel bond film (pre-cut), markers, rulers

M1D3

48 hr preceding laboratory:

  • seed CHO (350K) in T75 flasks, 1 per team
    • teaching faculty will harvest cells just prior to student use and concentrate to 500K / mL

prior to laboratory

  • teaching faculty will prepare Click-iT reaction mix

in tissue culture room (per team):

  • none

in main lab (per team):

  • 9 mL 1X TBS
  • not aliquoted: Triton-X, BSA, anti-γH2AX antibody, mounting media, 1X PBS, LMP solution

students will prepare following solutions in class:

  1. Triton-X solution = 2.5 mL 1X TBS containing 0.2% Triton-X
  2. blocking solution = 2.5 mL 1X TBS containing 1% BSA
  3. 1° antibody solution = 2.5 mL blocking solution containing 1:1000 dilution of anti-γH2AX antibody

M1D4

48 hr preceding laboratory:

  • seed CHO (350K) in T75 flasks, 1 per team
    • teaching faculty will harvest cells just prior to student use and concentrate to 500K / mL

prior to laboratory

  • teaching faculty will prepare CometChips, 1 per team

in tissue culture room (per team):

  • none

in main lab (per team):

  • 50 μL 12 mM MMS
  • 10 μL 100 mM As
  • 12 mL media
  • not aliquoted: 1X PBS, LMP solution, alkaline lysis buffer

M1D5

in tissue culture (per team):

  • none

in main lab (per team):

  • not aliquoted: unwinding / electrophoresis buffer, neutralization buffer, SYBR gold

M1D6

in tissue culture room (per team):

  • none

in main lab (per team):

  • none

M1D7

in tissue culture room (per team):

  • none

in main lab (per team):

  • none