Difference between revisions of "20.109(F18):Class data"
From Course Wiki
(→W/F) |
(→W/F) |
||
Line 229: | Line 229: | ||
|- | |- | ||
|yellow | |yellow | ||
− | |[[Media:Fa18 WF yellow.zip| files]] | + | |[[Media:Fa18 WF yellow .zip| files]] |
|- | |- | ||
|green | |green | ||
Line 235: | Line 235: | ||
|- | |- | ||
|blue | |blue | ||
− | |[[Media:Fa18 WF | + | |[[Media:Fa18 WF blue.zip| files]] |
|- | |- | ||
|} | |} |
Revision as of 18:20, 2 November 2018
Contents
Module 1
Cell Loading Data
CometChip Data
Team | Analyzed Data |
T/R red | Analyzed CometChip data |
T/R orange | Analyzed CometChip data |
T/R green | Analyzed CometChip data |
T/R pink | Analyzed CometChip data |
T/R purple | Analyzed CometChip data |
Team | Analyzed Data |
W/F yellow | Analyzed CometChip data |
W/F green | Analyzed CometChip data |
W/F blue | Analyzed CometChip data |
W/F pink | Analyzed CometChip data |
gamma-H2AX Data
Team | Recovery time (min) | Raw gamma-H2AX Data | Analyzed gamma-H2AX Data |
T/R red | 30 | raw data | analyzed data |
T/R orange | 30 | raw data | analyzed data |
T/R green | 30 | raw data | analyzed data |
T/R pink | 30 | raw data | analyzed data |
T/R purple | 60 | raw data | analyzed data |
Team | Recovery time (min) | Raw gamma-H2AX Data | Analyzed gamma-H2AX Data |
W/F yellow | 30 | raw data | analyzed data |
W/F green | 30 | raw data | analyzed data |
W/F blue | 60 | raw data | analyzed data |
W/F pink | 30 | raw data | analyzed data |
Module 2
Fermentation product and gene targeted:
T/R
Team | Ethanol (E) or Acetate (A) | Gene targeted by CRISPRi gRNA | gRNA (DNA) sequence (without tag at 3' end) | Locus targeted (eg. beginning of gene, putative promoter, -35 region) | Target template or nontemplate strand | |
TR red | E | pta | TGCGCCCGATCAGACTACGACTATC | Middle of the operon | Non-template | |
TR orange | E | ldhA | gttgcaggtacttcttgtcgt | 32 bps downstream from start of gene | Template Strand | |
TR green | A | adhE | TACTAAAAAAGTTTAACATTATCA | locus targeted: -50 upstream (promoter) | Template strand | |
TR pink | A | Citrate Synthase (gltA) | tgagttttgcttttgtatcagccat | Beginning of gene | Non-template Strand | |
TR purple | A | ldhA | TAGTAGCTTAAATGTGATTCAACAT | Locus targeted: -40 upstream region (promoter) | Non-template strand |
W/F
Team | Ethanol (E) or Acetate (A) | Gene targeted by CRISPRi gRNA | gRNA (DNA) sequence (without tag at 3' end) | Locus targeted (eg. beginning of gene, putative promoter, -35 region) | Target template or nontemplate strand |
WF yellow | A | adhE | ATTCGAGCAGATGATTTACTAAAAA | ||
WF green | Acetate | adhE | TTACTAAAAAAGTTTAACATTATCA | ||
WF blue | A | adhE | TTCGAGCAGATGATTTACTAAA |
gRNA_target Sequencing Results
T/R
Team | pgRNA sequencing |
red | files |
orange | files |
green | files |
pink | files |
purple | files |
W/F
Team | pgRNA sequencing |
yellow | files |
green | files |
blue | files |