Difference between revisions of "20.109(F18):Class data"
From Course Wiki
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|Citrate Synthase (gltA) | |Citrate Synthase (gltA) | ||
|tgagttttgcttttgtatcagccat | |tgagttttgcttttgtatcagccat | ||
− | | | + | |Beginning of Gene |
− | | | + | |Non-template Strand |
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|TR purple | |TR purple |
Revision as of 18:31, 1 November 2018
Contents
Module 1
Cell Loading Data
CometChip Data
Team | Analyzed Data |
T/R red | Analyzed CometChip data |
T/R orange | Analyzed CometChip data |
T/R green | Analyzed CometChip data |
T/R pink | Analyzed CometChip data |
T/R purple | Analyzed CometChip data |
Team | Analyzed Data |
W/F yellow | Analyzed CometChip data |
W/F green | Analyzed CometChip data |
W/F blue | Analyzed CometChip data |
W/F pink | Analyzed CometChip data |
gamma-H2AX Data
Team | Recovery time (min) | Raw gamma-H2AX Data | Analyzed gamma-H2AX Data |
T/R red | 30 | raw data | analyzed data |
T/R orange | 30 | raw data | analyzed data |
T/R green | 30 | raw data | analyzed data |
T/R pink | 30 | raw data | analyzed data |
T/R purple | 60 | raw data | analyzed data |
Team | Recovery time (min) | Raw gamma-H2AX Data | Analyzed gamma-H2AX Data |
W/F yellow | 30 | raw data | analyzed data |
W/F green | 30 | raw data | analyzed data |
W/F blue | 60 | raw data | analyzed data |
W/F pink | 30 | raw data | analyzed data |
Module 2
Fermentation product and gene targeted:
T/R
Team | Ethanol (E) or Acetate (A) | Gene targeted by CRISPRi gRNA | gRNA (DNA) sequence (without tag at 3' end) | Locus targeted (eg. beginning of gene, putative promoter, -35 region) | Target template or nontemplate strand |
TR red | E | pta | TGCGCCCGATCAGACTACGACTATC | ||
TR orange | E | ldhA | gttgcaggtacttcttgtcgt | ||
TR green | A | adhE | TACTAAAAAAGTTTAACATTATCA | ||
TR pink | A | Citrate Synthase (gltA) | tgagttttgcttttgtatcagccat | Beginning of Gene | Non-template Strand |
TR purple | A | ldhA | TAGTAGCTTAAATGTGATTCAACAT |
W/F
Team | Ethanol (E) or Acetate (A) | Gene targeted by CRISPRi gRNA | gRNA (DNA) sequence (without tag at 3' end) | Locus targeted (eg. beginning of gene, putative promoter, -35 region) | Target template or nontemplate strand |
WF yellow | A | adhE | ATTCGAGCAGATGATTTACTAAAAA | ||
WF green | Acetate | adhE | TTACTAAAAAAGTTTAACATTATCA | ||
WF blue | A | adhE | TTCGAGCAGATGATTTACTAAA |
gRNA_target Sequencing Results
T/R
Team | pgRNA sequencing |
red | files |
orange | files |
green | files |
pink | files |
purple | files |
W/F
Team | pgRNA sequencing |
yellow | files |
green | files |
blue | files |