Difference between revisions of "20.309 Main Page"
From Course Wiki
Juliesutton (Talk | contribs) (→Module 2: electronics, signals and systems) |
MAXINE JONAS (Talk | contribs) (→Module 2: electronics, signals and systems) |
||
| Line 154: | Line 154: | ||
| <font color=#04B45F>12/11/18</font color> | | <font color=#04B45F>12/11/18</font color> | ||
| Assignment 11 | | Assignment 11 | ||
| − | | | + | | [[Assignment 11: Tell us about your lab visit]] |
| | | | ||
|- | |- | ||
Revision as of 16:46, 3 December 2018
Bioinstrumentation scholars: you are welcome to edit and improve this course wiki. Correct, helpful, exquisitely-expressed changes will increase your class participation grade. Alterations not meeting those critera may have the opposite effect.
If you would like to contribute to this site, please request an account.
20.309 course information
- 20.309 course information
- lab safety
- Reserve a lab station here: Bioinstrumentation Lab reservation system
20.309 master schedule
Module 1: Optics & Microscopy
| Important dates | Assignment due | Assignment page links | Useful resources |
| 9/16/18 | Assignment 1 |
| |
| 9/23/18 | Assignment 2 | Assignment 2 Overview | |
| 9/27/18 | Quiz 1 (in lecture) | ||
| 9/30/18 | Assignment 3 | Assignment 3 Overview | |
| 10/7/18 | Assignment 4 | ||
| 10/14/18 | Assignment 5 | Assignment 5 Overview | |
| 10/18/18 | Exam 1 (at 7:30pm in 35-225) |
Module 2: electronics, signals and systems
| Important dates | Assignment due | Assignment page links | Useful resources |
| 10/28/18 | Assignment 6 | Assignment 6 overview | |
| 11/4/18 | Assignment 7 | Electronics bootcamp II: feedback systems | |
| 11/9/18 | Quiz 2 (in lecture) | ||
| 11/11/18 | Assignment 8 | Assignment 8 Overview: flow channel & two-color microscope | *The* yeast paper: Mettelal et al., Science (2008) |
| 11/18/18 | Assignment 9 | Assignment 9 Overview: Analyzing yeast images | |
| 12/2/18 | Assignment 10 | Assignment 10, Part 1: Measuring the osmotic shock response of yeast | |
| 12/6/18 | Exam 2 (at 7:30pm in 35-225) | ||
| 12/11/18 | Assignment 11 | Assignment 11: Tell us about your lab visit |
Optics and microscopy resources
Background reading
- Geometrical optics and ray tracing
- Physical optics and resolution
- Optical aberrations
- Aperture and field stops
- Optical detectors, noise, and the limit of detection
- Manta G032 camera measurements
- Understanding log plots
Code examples and simulations
- Converting Gaussian fit to Rayleigh resolution
- MATLAB: Estimating resolution from a PSF slide image
- Matlab: Scalebars
- Calculating MSD and Diffusion Coefficients
Electronics resources
Background reading
- Electronics primer
- Khan Academy Material, esp. "Ideal Circuit Elements" and "Voltage Divider"
- Real electronics
- Impedance analysis
- Transfer functions and Bode plots
- Complex number review
- Input and output impedance
Code examples and simulations
- DNA Melting: Simulating DNA Melting - Basics
- DNA Melting: Simulating DNA Melting - Intermediate Topics
- DNA Melting: Model function and parameter estimation by nonlinear regression
Reference materials
Limits of detection mini-lab
- Lab Manual: Limits of Detection
- Lab Manual: Atomic Force Microscopy (AFM)
- Limits of Detection: Data Sessions
