Difference between revisions of "20.309 Main Page"
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Juliesutton (Talk | contribs) (→20.309 master schedule) |
MAXINE JONAS (Talk | contribs) (→Module 1: Optics & Microscopy) |
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|style="width: 45%;"|'''Useful resources''' | |style="width: 45%;"|'''Useful resources''' | ||
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| Assignment 1 | | Assignment 1 | ||
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* [[Understanding log plots]] | * [[Understanding log plots]] | ||
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| Assignment 2 | | Assignment 2 | ||
| [[Assignment 2: fluorescence microscopy| Assignment 2 Overview]] | | [[Assignment 2: fluorescence microscopy| Assignment 2 Overview]] | ||
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* [[Manta G032 camera measurements]] | * [[Manta G032 camera measurements]] | ||
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| Quiz 1 (in lecture) | | Quiz 1 (in lecture) | ||
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| − | | <font color=#04B45F> | + | | <font color=#04B45F>9/30/18</font color> |
| Assignment 3 | | Assignment 3 | ||
| [[Assignment 3 Overview|Assignment 3 Overview]] | | [[Assignment 3 Overview|Assignment 3 Overview]] | ||
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*[[Matlab: Scalebars]] | *[[Matlab: Scalebars]] | ||
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| Assignment 4 | | Assignment 4 | ||
|{{Template:Assignment 4 navigation}} | |{{Template:Assignment 4 navigation}} | ||
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* [[Physical optics and resolution]] | * [[Physical optics and resolution]] | ||
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| Assignment 5 | | Assignment 5 | ||
| [[Assignment 5 Overview|Assignment 5 Overview]] | | [[Assignment 5 Overview|Assignment 5 Overview]] | ||
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* [[Calculating MSD and Diffusion Coefficients]] | * [[Calculating MSD and Diffusion Coefficients]] | ||
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| − | | Exam 1 (at 7:30pm in | + | | Exam 1 (at 7:30pm in 32-155) |
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Revision as of 13:22, 8 August 2018
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20.309 course information
- 20.309 course information
- lab safety
- Reserve a lab station here: Bioinstrumentation Lab reservation system
20.309 master schedule
Module 1: Optics & Microscopy
| Important dates | Assignment due | Assignment page links | Useful resources |
| 9/16/18 | Assignment 1 |
| |
| 9/23/18 | Assignment 2 | Assignment 2 Overview | |
| 9/27/18 | Quiz 1 (in lecture) | ||
| 9/30/18 | Assignment 3 | Assignment 3 Overview | |
| 10/7/18 | Assignment 4 | ||
| 10/14/18 | Assignment 5 | Assignment 5 Overview | |
| 10/18/18 | Exam 1 (at 7:30pm in 32-155) |
Module 2: Signals and Systems
| Important dates | Assignment due | Assignment page links | Useful resources |
| 4/8/18 | Assignment 6 | Assignment 6 Overview | |
| 4/15/18 | Assignment 7 | Assignment 7 Overview | |
| 4/19/18 | Quiz 2 (in lecture) | ||
| 4/22/18 | Assignment 8 | Assignment 8 Overview | |
| 4/29/18 | Assignment 9 | Assignment 9 Overview | |
| 5/6/18 | Assignment 10 | Assignment 10: measure DNA melting curves and identify your unknown sample. | |
| 5/10/18 | Exam 2 (at 7:30pm in 4-237) |
Optics and microscopy resources
Background reading
- Geometrical optics and ray tracing
- Physical optics and resolution
- Optical aberrations
- Aperture and field stops
- Optical detectors, noise, and the limit of detection
- Manta G032 camera measurements
- Understanding log plots
Code examples and simulations
- Converting Gaussian fit to Rayleigh resolution
- MATLAB: Estimating resolution from a PSF slide image
- Matlab: Scalebars
- Calculating MSD and Diffusion Coefficients
Electronics resources
Background reading
- Electronics primer
- Khan Academy Material, esp. "Ideal Circuit Elements" and "Voltage Divider"
- Real electronics
- Impedance analysis
- Transfer functions and Bode plots
- Complex number review
- Input and output impedance
Code examples and simulations
- DNA Melting: Simulating DNA Melting - Basics
- DNA Melting: Simulating DNA Melting - Intermediate Topics
- DNA Melting: Model function and parameter estimation by nonlinear regression
Reference materials
Limits of detection mini-lab
- Lab Manual: Limits of Detection
- Lab Manual: Atomic Force Microscopy (AFM)
- Limits of Detection: Data Sessions
