Difference between revisions of "20.309 Main Page"
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MAXINE JONAS (Talk | contribs) (→Module 1: Optics & Microscopy) |
MAXINE JONAS (Talk | contribs) (→Module 2: Signals and Systems) |
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|style="width: 45%;"|'''Useful resources''' | |style="width: 45%;"|'''Useful resources''' | ||
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| Assignment 6 | | Assignment 6 | ||
| [[Assignment 6 Overview]] | | [[Assignment 6 Overview]] | ||
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* [[Complex Number Review|Complex number review]] | * [[Complex Number Review|Complex number review]] | ||
* [[Input and output impedance]] | * [[Input and output impedance]] | ||
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| Assignment 7 | | Assignment 7 | ||
| [[Assignment 7 Overview]] | | [[Assignment 7 Overview]] | ||
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* [[Assignment 7, Part 2: measure temperature and fluorescence| Part 2: measure temperature and fluorescence]] | * [[Assignment 7, Part 2: measure temperature and fluorescence| Part 2: measure temperature and fluorescence]] | ||
* [[Assignment 7, Part 3: testing your instrument and measuring a DNA melting curve| Part 3: test your instrument and measure a preliminary melting curve]] | * [[Assignment 7, Part 3: testing your instrument and measuring a DNA melting curve| Part 3: test your instrument and measure a preliminary melting curve]] | ||
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| + | | <font color=#04B45F>4/19/18</font color> | ||
| + | | Quiz 2 (in lecture) | ||
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* [[DNA Melting Thermodynamics]] | * [[DNA Melting Thermodynamics]] | ||
* [[Real electronics]] | * [[Real electronics]] | ||
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* [[Input and output impedance]] | * [[Input and output impedance]] | ||
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| Assignment 8 | | Assignment 8 | ||
| [[Assignment 8 Overview]] | | [[Assignment 8 Overview]] | ||
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* [http://mfold.rna.albany.edu/?q=DINAMelt/Hybrid2 DINAMelt Web Server] | * [http://mfold.rna.albany.edu/?q=DINAMelt/Hybrid2 DINAMelt Web Server] | ||
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| Assignment 9 | | Assignment 9 | ||
| [[Assignment 9 Overview]] | | [[Assignment 9 Overview]] | ||
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* [[DNA melting: Identifying the unknown sample]] | * [[DNA melting: Identifying the unknown sample]] | ||
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| Assignment 10 | | Assignment 10 | ||
| [[Assignment 10 Overview|Assignment 10: measure DNA melting curves and identify your unknown sample.]] | | [[Assignment 10 Overview|Assignment 10: measure DNA melting curves and identify your unknown sample.]] | ||
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* [[DNA Melting: Model function and parameter estimation by nonlinear regression]] | * [[DNA Melting: Model function and parameter estimation by nonlinear regression]] | ||
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| Exam 2 (at 7:30pm in 4-163) | | Exam 2 (at 7:30pm in 4-163) | ||
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Revision as of 21:27, 24 January 2018
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20.309 course information
- 20.309 course information
- lab safety
- Reserve a lab station here: Bioinstrumentation Lab reservation system
20.309 master schedule
Module 1: Optics & Microscopy
| Important dates | Assignment due | Assignment page links | Useful resources |
| 2/16/18 | Assignment 1 |
| |
| 2/25/18 | Assignment 2 | Assignment 2 Overview | |
| 3/1/18 | Quiz 1 (in lecture) | ||
| 3/4/18 | Assignment 3 | Assignment 3 Overview | |
| 3/11/18 | Assignment 4 | ||
| 3/18/18 | Assignment 5 | Assignment 5 Overview | |
| 3/22/18 | Exam 1 (at 7:30pm in 4-163) |
Module 2: Signals and Systems
| Important dates | Assignment due | Assignment page links | Useful resources | |
| 4/8/18 | Assignment 6 | Assignment 6 Overview | ||
| 4/15/18 | Assignment 7 | Assignment 7 Overview | ||
| 4/19/18 | Quiz 2 (in lecture) | |||
| 4/22/18 | Assignment 8 | Assignment 8 Overview | ||
| 4/29/18 | Assignment 9 | Assignment 9 Overview | ||
| 5/6/18 | Assignment 10 | Assignment 10: measure DNA melting curves and identify your unknown sample. | ||
| 5/10/18 | Exam 2 (at 7:30pm in 4-163) |
Optics and microscopy resources
Background reading
- Geometrical optics and ray tracing
- Physical optics and resolution
- Optical aberrations
- Aperture and field stops
- Optical detectors, noise, and the limit of detection
- Manta G032 camera measurements
- Understanding log plots
Code examples and simulations
- Converting Gaussian fit to Rayleigh resolution
- MATLAB: Estimating resolution from a PSF slide image
- Matlab: Scalebars
- Calculating MSD and Diffusion Coefficients
Electronics resources
Background reading
- Electronics primer
- Khan Academy Material, esp. "Ideal Circuit Elements" and "Voltage Divider"
- Real electronics
- Impedance analysis
- Transfer functions and Bode plots
- Complex number review
- Input and output impedance
Code examples and simulations
- DNA Melting: Simulating DNA Melting - Basics
- DNA Melting: Simulating DNA Melting - Intermediate Topics
- DNA Melting: Model function and parameter estimation by nonlinear regression
Reference materials
Limits of detection mini-lab
- Lab Manual: Limits of Detection
- Lab Manual: Atomic Force Microscopy (AFM)
- Limits of Detection: Data Sessions
