Difference between revisions of "20.109: Spring 2007 schedule"

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|  
 
|  
 
| Tue Feb 6  
 
| Tue Feb 6  
−
| [[Natalie Kuldell | NK]]
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| [http://openwetware.org/wiki/Natalie_Kuldell  | NK]
 
|  
 
|  
 
| [[20.109(S07):Lab tour | Orientation]]
 
| [[20.109(S07):Lab tour | Orientation]]
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| 1
 
| 1
 
| Thur Feb 8
 
| Thur Feb 8
−
| [[Drew Endy | DE]]
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| [http://openwetware.org/wiki/Drew_Endy  | DE]
−
| [[Sean Clarke | SC]]
+
| [http://openwetware.org/wiki/Sean_Clarke  | SC]
 
| [[20.109(S07):Start-up genome engineering | Start-up genome engineering]]
 
| [[20.109(S07):Start-up genome engineering | Start-up genome engineering]]
−
|
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| [[Media:20109080207.pdf | PDF]] of class discussion slides
 
|--
 
|--
 
| 1
 
| 1
 
| 2
 
| 2
 
| Tue Feb 13  
 
| Tue Feb 13  
−
| [[Drew Endy | DE]]
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| [http://openwetware.org/wiki/Drew_Endy  | DE]
−
| [[Sean Clarke | SC]]
+
| [http://openwetware.org/wiki/Sean_Clarke  | SC]
 
| [[20.109(S07): Agarose gel electrophoresis| Agarose gel electrophoresis]]
 
| [[20.109(S07): Agarose gel electrophoresis| Agarose gel electrophoresis]]
−
|
+
| [[Media:20109M1L2.pdf | PDF]] of class notes
 
|--
 
|--
 
| 1
 
| 1
 
| 3
 
| 3
 
| Thur Feb 15
 
| Thur Feb 15
−
| [[Drew Endy | DE]]
+
| [http://openwetware.org/wiki/Drew_Endy  | DE]
−
| [[Sean Clarke | SC]]
+
| [http://openwetware.org/wiki/Sean_Clarke  | SC]
−
| [[20.109(S07): DNA ligation and bacterial transformation| DNA ligation and bacterial transformation]]
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| [http://openwetware.org/wiki/20.109(S07):_DNA_ligation_and_bacterial_transformation | DNA ligation and bacterial transformation]
 
|
 
|
 
|--
 
|--
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| 4
 
| 4
 
| Thur Feb 22
 
| Thur Feb 22
−
| [[Drew Endy | DE]]
+
| [http://openwetware.org/wiki/Drew_Endy  | DE]
−
| [[Sean Clarke | SC]]
+
| [http://openwetware.org/wiki/Sean_Clarke  | SC]
−
| [[20.109(S07): Examine candidate clones| Examine candidate clones]]
+
| [http://openwetware.org/wiki/20.109(S07):_Examine_candidate_clones | Examine candidate clones]
−
|
+
| guest lecture from Harlan Breindel
 
|--
 
|--
 
| 1
 
| 1
 
| 5
 
| 5
 
| Tue Feb 27
 
| Tue Feb 27
−
| [[Drew Endy | DE]]
+
| [http://openwetware.org/wiki/Drew_Endy  | DE]
−
| [[Sean Clarke | SC]]
+
| [http://openwetware.org/wiki/Sean_Clarke  | SC]
 
| [[20.109(S07): Western analysis| Western analysis]]
 
| [[20.109(S07): Western analysis| Western analysis]]
−
|
+
| [[Media:2010927022007.pdf | PDF]] of class discussion slides
 
|--
 
|--
 
| 1
 
| 1
 
| 6
 
| 6
 
| Thur Mar 1
 
| Thur Mar 1
−
| [[Drew Endy | DE]]
+
| [http://openwetware.org/wiki/Drew_Endy  | DE]
−
| [[Sean Clarke | SC]]
+
| [http://openwetware.org/wiki/Sean_Clarke  | SC]
−
| [[20.109(S07): Probe western| Probe western]]
+
| [http://openwetware.org/wiki/20.109(S07):_Probe_western | Probe western]
−
| first draft of writing assignment due  
+
| first draft of [[20.109(S07): Genome engineering essay| your writing assignment]] due before lab, [[Media:2010901032007.pdf | PDF]] of class slides
 
|--
 
|--
 
| colspan="7" |
 
| colspan="7" |
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| Tue Mar 6  
 
| Tue Mar 6  
 
| AJ
 
| AJ
−
| [[Yoon Sung Nam | YSN]]
+
| [http://openwetware.org/wiki/Yoon_Sung_Nam  | YSN]
 
| [[20.109(S07): Start-up signal measurement| Start-up signal measurement]]
 
| [[20.109(S07): Start-up signal measurement| Start-up signal measurement]]
 
|
 
|
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| Thur Mar 8
 
| Thur Mar 8
 
| AJ
 
| AJ
−
| [[Yoon Sung Nam | YSN]]
+
| [http://openwetware.org/wiki/Yoon_Sung_Nam  | YSN]
 
| [[20.109(S07): Measuring calcium in vitro| Measuring calcium in vitro]]
 
| [[20.109(S07): Measuring calcium in vitro| Measuring calcium in vitro]]
 
|
 
|
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| Tue Mar 13
 
| Tue Mar 13
 
| AJ
 
| AJ
−
| [[Yoon Sung Nam | YSN]]
+
| [http://openwetware.org/wiki/Yoon_Sung_Nam  | YSN]
 
| [[20.109(S07): Lipofection| Lipofection]]
 
| [[20.109(S07): Lipofection| Lipofection]]
 
|
 
|
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| Thur Mar 15
 
| Thur Mar 15
 
| AJ
 
| AJ
−
| [[Yoon Sung Nam | YSN]]
+
| [http://openwetware.org/wiki/Yoon_Sung_Nam  | YSN]
 
| [[20.109(S07): Measuring calcium in vivo| Measuring calcium in vivo]]
 
| [[20.109(S07): Measuring calcium in vivo| Measuring calcium in vivo]]
 
|
 
|
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| Tue Mar 20  
 
| Tue Mar 20  
 
| AJ
 
| AJ
−
| [[Yoon Sung Nam | YSN]]
+
| [http://openwetware.org/wiki/Yoon_Sung_Nam  | YSN]
 
| [[20.109(S07): Calcium signaling in vivo| Calcium signaling in vivo]]
 
| [[20.109(S07): Calcium signaling in vivo| Calcium signaling in vivo]]
 
|
 
|
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| Thur Mar 22
 
| Thur Mar 22
 
| AJ
 
| AJ
−
| [[Yoon Sung Nam | YSN]]
+
| [http://openwetware.org/wiki/Yoon_Sung_Nam  | YSN]
 
| [[20.109(S07): Student presentations, module 2 | Student presentations]]
 
| [[20.109(S07): Student presentations, module 2 | Student presentations]]
 
|
 
|
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| 1
 
| 1
 
| Tue Apr 3
 
| Tue Apr 3
−
| [[Natalie Kuldell | NK]]
+
| [http://openwetware.org/wiki/Natalie_Kuldell  | NK]
−
| [[Andrea Tentner | AT]]
+
| [http://openwetware.org/wiki/Andrea_Tentner  | AT]
 
| [[20.109(S07): Start-up expression engineering| Start-up expression engineering]]
 
| [[20.109(S07): Start-up expression engineering| Start-up expression engineering]]
−
|
+
| [[Media:Macintosh HD-Users-nkuldell-Desktop-lectures-BE109 lectures (S07)-109(S07)lect1 handout.pdf| PDF]] of M3D1 lecture slides 
 
|--
 
|--
 
| 3
 
| 3
 
| 2
 
| 2
 
| Thur Apr 5
 
| Thur Apr 5
−
| [[Natalie Kuldell | NK]]
+
| [http://openwetware.org/wiki/Natalie_Kuldell  | NK]
−
| [[Andrea Tentner | AT]]
+
| [http://openwetware.org/wiki/Andrea_Tentner  | AT]
 
| [[20.109(S07): Yeast transformation| Yeast transformation]]
 
| [[20.109(S07): Yeast transformation| Yeast transformation]]
−
|
+
| [[Media:Macintosh HD-Users-nkuldell-Desktop-lectures-BE109 lectures (S07)-109(S07)lect2 handout.pdf| PDF]] of M3D2 lecture slides
 
|--
 
|--
 
| 3
 
| 3
 
| 3
 
| 3
 
| Tue Apr 10  
 
| Tue Apr 10  
−
| [[Natalie Kuldell | NK]]
+
| [http://openwetware.org/wiki/Natalie_Kuldell  | NK]
−
| [[Andrea Tentner | AT]]
+
| [http://openwetware.org/wiki/Andrea_Tentner  | AT]
 
| [[20.109(S07): Colony PCR| Colony PCR]]
 
| [[20.109(S07): Colony PCR| Colony PCR]]
−
| guest lecture: Harlan Breindel
+
| guest lecture: Susan Ruff and her slides are [[Media:Macintosh HD-Users-nkuldell-Desktop-What is I M R D Anyway.pdf| here]]
 
|--
 
|--
 
| 3
 
| 3
 
| 4
 
| 4
 
| Thur Apr 12  
 
| Thur Apr 12  
−
| [[Natalie Kuldell | NK]]
+
| [http://openwetware.org/wiki/Natalie_Kuldell  | NK]
−
| [[Andrea Tentner | AT]]
+
| [http://openwetware.org/wiki/Andrea_Tentner  | AT]
−
| [[20.109(S07): Screen for phenotypes, isolate RNA| Screen for phenotypes, isolate RNA]]
+
| [http://openwetware.org/wiki/20.109(S07):_Screen_for_phenotypes,_isolate_RNA | Screen for phenotypes, isolate RNA]
−
|  
+
| [[Media:Macintosh HD-Users-nkuldell-Desktop-lectures-BE109 lectures (S07)-109(S07)lect3 handout.pdf | PDF]] of M3D4 lecture slides
 
|--
 
|--
 
|
 
|
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| 5
 
| 5
 
| Thur Apr 19
 
| Thur Apr 19
−
| [[Natalie Kuldell | NK]]
+
| [http://openwetware.org/wiki/Natalie_Kuldell  | NK]
−
| [[Andrea Tentner | AT]]
+
| [http://openwetware.org/wiki/Andrea_Tentner  | AT]
 
| [[20.109(S07): cDNA synthesis and microarray| cDNA synthesis and microarray]]
 
| [[20.109(S07): cDNA synthesis and microarray| cDNA synthesis and microarray]]
−
|
+
| [[Media:109(S07)lect4 handout.pdf| PDF]] of M3D5 lecture slides
 
|--
 
|--
 
| 3
 
| 3
 
| 6
 
| 6
 
| Tue Apr 24
 
| Tue Apr 24
−
| [[Natalie Kuldell | NK]]
+
| [http://openwetware.org/wiki/Natalie_Kuldell  | NK]
−
| [[Andrea Tentner | AT]]
+
| [http://openwetware.org/wiki/Andrea_Tentner  | AT]
 
| [[20.109(S07): Microarray data analysis| Microarray data analysis]]
 
| [[20.109(S07): Microarray data analysis| Microarray data analysis]]
−
| guest lecture: Rebecca Fry
+
| guest lecture: Rebecca Fry <br> and her slides are [[Media:Macintosh HD-Users-nkuldell-Desktop-dataanalysis20071.pdf| here]]
 
|--
 
|--
 
| colspan="7" |
 
| colspan="7" |
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| Thur Apr 26
 
| Thur Apr 26
 
| AB
 
| AB
−
| [[Chandni Valiathan | CV]]
+
| [http://openwetware.org/wiki/Chandni_Valiathan  | CV]
−
| possibly transform M13.1 into XL1-b vs MDS
+
| [[20.109(S07):Bio-material engineering/Screening library | Screening library]]
−
| first draft of writing assignment due
+
|  
 
|--
 
|--
 
| 4
 
| 4
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| Tue May 1  
 
| Tue May 1  
 
| AB
 
| AB
−
| [[Chandni Valiathan | CV]]
+
| [http://openwetware.org/wiki/Chandni_Valiathan  | CV]
−
| possibly test for M13.1 sup for phage/Western
+
| [[20.109(S07): Bio-material engineering/Optimizing panning | Optimizing panning]]
−
|  
+
| first draft of [[20.109(S07): Expression engineering report| your writing assignment]] due Monday April 30th by 9AM
 
|--
 
|--
 
| 4
 
| 4
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| Thur May 3
 
| Thur May 3
 
| AB
 
| AB
−
| [[Chandni Valiathan | CV]]
+
| [http://openwetware.org/wiki/Chandni_Valiathan  | CV]
−
| phage battery pt 1
+
| [[20.109(S07): Bio-material engineering/Rescreening gold binders | Rescreening gold binders]]
−
| Mod 3 writing assignment returned for revision
+
|  
 
|--
 
|--
 
| 4
 
| 4
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| Tue May 8
 
| Tue May 8
 
| AB
 
| AB
−
| [[Chandni Valiathan | CV]]
+
| [http://openwetware.org/wiki/Chandni_Valiathan  | CV]
−
| phage battery pt 2
+
| [[20.109(S07): Bio-material engineering/PCR of gold binding candidates | PCR of gold binding candidates]]
−
|  
+
| Mod 3 lab reports returned for revision
 
|--
 
|--
 
| 4
 
| 4
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| Thur May 10
 
| Thur May 10
 
| AB
 
| AB
−
| [[Chandni Valiathan | CV]]
+
| [http://openwetware.org/wiki/Chandni_Valiathan  | CV]
−
| phage battery pt 3
+
| [http://openwetware.org/wiki/20.109_(S07):_Research_proposal,_module_4 | Student presentations]
−
| Revised Mod 3 writing assignment due
+
|  
 
|--
 
|--
 
| 4
 
| 4
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| Tue May 15  
 
| Tue May 15  
 
| AB
 
| AB
−
| [[Chandni Valiathan | CV]]
+
| [http://openwetware.org/wiki/Chandni_Valiathan  | CV]
−
| [[20.109(S07):Student presentations, module 2 | Student presentations]]
+
| [[20.109(S07): Bio-material engineering/Sequence analysis | Analyze sequence data]]
−
|
+
| Revised Mod 3 writing assignment due before lab<br> no lecture today
 
|--
 
|--
 
|
 
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|
 
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| Thur May 18
+
| Thur May 17
 
|
 
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|

Latest revision as of 15:31, 15 June 2015


20.109: Laboratory Fundamentals of Biological Engineering

Macintosh HD-Users-nkuldell-Desktop-20.109template.png

Home        People        Schedule Spring 2007        Lab Basics        OWW Basics       
Genome Engineering        Biophysical Signal Measurement        Expression Engineering        Biomaterial Engineering       

MODULE DAY DATE LECTURER TA LAB note
Tue Feb 6 NK] Orientation
1 1 Thur Feb 8 DE] SC] Start-up genome engineering PDF of class discussion slides
1 2 Tue Feb 13 DE] SC] Agarose gel electrophoresis PDF of class notes
1 3 Thur Feb 15 DE] SC] DNA ligation and bacterial transformation]
President's Day Feb 19 No lab Feb 20 or Feb 21
1 4 Thur Feb 22 DE] SC] Examine candidate clones] guest lecture from Harlan Breindel
1 5 Tue Feb 27 DE] SC] Western analysis PDF of class discussion slides
1 6 Thur Mar 1 DE] SC] Probe western] first draft of your writing assignment due before lab, PDF of class slides
2 1 Tue Mar 6 AJ YSN] Start-up signal measurement
2 2 Thur Mar 8 AJ YSN] Measuring calcium in vitro
2 3 Tue Mar 13 AJ YSN] Lipofection
2 4 Thur Mar 15 AJ YSN] Measuring calcium in vivo
2 5 Tue Mar 20 AJ YSN] Calcium signaling in vivo
2 6 Thur Mar 22 AJ YSN] Student presentations
Spring Break Mar 26-30 No lab all week
3 1 Tue Apr 3 NK] AT] Start-up expression engineering PDF of M3D1 lecture slides
3 2 Thur Apr 5 NK] AT] Yeast transformation PDF of M3D2 lecture slides
3 3 Tue Apr 10 NK] AT] Colony PCR guest lecture: Susan Ruff and her slides are here
3 4 Thur Apr 12 NK] AT] Screen for phenotypes, isolate RNA] PDF of M3D4 lecture slides
Patriot's Day April 16-17 No lab Apr 17 or Apr 18
3 5 Thur Apr 19 NK] AT] cDNA synthesis and microarray PDF of M3D5 lecture slides
3 6 Tue Apr 24 NK] AT] Microarray data analysis guest lecture: Rebecca Fry
and her slides are here
4 1 Thur Apr 26 AB CV] Screening library
4 2 Tue May 1 AB CV] Optimizing panning first draft of your writing assignment due Monday April 30th by 9AM
4 3 Thur May 3 AB CV] Rescreening gold binders
4 4 Tue May 8 AB CV] PCR of gold binding candidates Mod 3 lab reports returned for revision
4 5 Thur May 10 AB CV] Student presentations]
4 6 Tue May 15 AB CV] Analyze sequence data Revised Mod 3 writing assignment due before lab
no lecture today
Thur May 17 Lecture only, no lab
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