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Compound Microscope Example	Confocal Wiki	Converting Gaussian fit to Rayleigh resolution
Course Journal -- Nathan S Lachenmyer	Coursework	Creating 20.109(S17):Scan slides to identify FKBP12 binders (Day5)
DAQ Ribbon Cable	DNA Melter Improvements	DNA Melting
DNA Melting: DNA Sequences	DNA Melting: Model function and parameter estimation by nonlinear regression	DNA Melting: Processing DNA Melting Data
DNA Melting: Simulating DNA Melting - Basics	DNA Melting: Simulating DNA Melting - Intermediate Topics	DNA Melting: Using the Basic DNAMelter GUI
DNA Melting: Using the LockIn DNAMelter GUI	DNA Melting: Using the Matlab DNAMelter GUI	DNA Melting II: Using the Matlab DNALockIn GUI
DNA Melting Part 1: Measuring Temperature and Fluorescence	DNA Melting Part 1: Simulating DNA Melting - Basics	DNA Melting Part 2: Lock-in Amplifier and Temperature Control
DNA Melting Part 2: Measuring Temperature and Fluorescence	DNA Melting Part 3: Simulating DNA Melting - Intermediate Topcs	DNA Melting Part 3: Simulating DNA Melting - Intermediate Topics
DNA Melting Part 4: Lock-in Amplifier and Temperature Control	DNA Melting Report Requirements	DNA Melting Report Requirements for Part 1
DNA Melting Report Requirements for Part 2	DNA Melting Thermodynamics	DNA melting: Identifying the unknown sample
DNA melting lab wiki pages	Data Sheets	Deconvolved Image
Develop Research proposal ideas and presentations	Device Creation	ESTORM
Electronics Mini-Lab	Electronics Module	Electronics Primer
Electronics boot camp I: passive circuits and transfer functions	Electronics boot camp lab part 1	Electronics bootcamp II: feedback systems
Electronics primer	Electronics written problems	Electronics written problems II
Emmanuel Quiroz	Equipment on loan	Error analysis
Estimating second order system parameters from noise power spectra using nonlinear regression	Exam 2 study guide	FPGA Design Environment
Fall 2010: DNA melting report outline	Fall 2010: Microscopy report outline	Fall 2010: Problem Set 3
Fall 2010 Syllabus	Fall 2012: Journal Presentations	Final Project: Spatial Light Modulator Galore
Final Project -- Nathan S Lachenmyer	Final Project Proposal Williams	Final Projects
Finding and measuring things	Flat-field correction	Fluorescence Imaging of Actin Cytoskeleton
Geometrical Optics	Geometrical optics and ray tracing	Hattie Chung
Identifying the unknown DNA sample	Impedance Analysis	In silico cloning of pdCas9 construct
Inkjet Technologies	Input and output impedance	Intro Electronics Lab Report
Introduction	Key Project Elements	Key estimates
Lab 1 Report -- Nathan S Lachenmyer	Lab 2 Report -- Nathan S Lachenmyer	Lab Manual:Atomic Force Microscopy (AFM)
Lab Manual:Intro to electronics	Lab Manual:Introduction to electronics	Lab Manual:Measuring DNA Melting Curves
Lab Manual:Optical Microscopy	Lab Manual:Optical Trapping	Lab Manual:Processing DNA Melting Data
Lab Manual: Atomic Force Microscopy (AFM)	Lab Manual: Limits of Detection	Lab Manual: Measuring DNA Melting Curves
Lab Manual: Optical Microscopy	Lab Manual: SLA 3D-Printed Microfluidic Device Master Mold	Lab Report Guidelines
Lab orientation	Laser cutter safe operating procedure	Lecture Notes:Modeling real systems with ideal elements
Limits of Detection:Report Requirements	Limits of Detection: Data Sessions	Limits of Detection: Lab Manual
Locating objects in a fluorescent microscopic image	MATLAB: Estimating resolution from a PSF slide image	MATLAB: Estimating viscoelastic spectrum using Mason's method
MATLAB: Intensity-weighted centroid noise formula	MRI lab: FPGA controller documentation	MSD of Sum and Difference Trajectories
Main Page	Manta G032 camera measurements	March14
Matlab:Division operators	Matlab:Image Processing for Fluorescent Microscopy	Matlab:Matlab Fundamentals
Matlab:Simulating DNA Melting	Matlab:Simulating DNA melting	Matlab: Scalebars
Matlab: Simulating Brownian motion	Measuring biological forces mini-lab	Measuring optical magnification
Methods	Microrheology Measurements via Particle Tracking	Microscope Objective Lenses
Microscopy report general guidelines	Microscopy report outline	More info on BJC2100 Attempt
Nonlinear regression	Objective	Optical Microscopy: Brownian motion and microscope stability
Optical Microscopy: Brownian motion and microscopy stability	Optical Microscopy: Construction of a microscope	Optical Microscopy: Fluorescence Microscopy
Optical Microscopy: Part 1 Report Outline	Optical Microscopy: Part 2 Report Outline	Optical Microscopy: Part 3 Report Outline
Optical Microscopy: Part 4 Report Outline	Optical Microscopy Data Sheets	Optical Microscopy Part 1: Bright Field Microscopy
Optical Microscopy Part 1: Brightfield Microscopy	Optical Microscopy Part 1b: Geometrical Optics and Ray Tracing	Optical Microscopy Part 1b: Ray Tracing
Optical Microscopy Part 1c: Physical Optics and Limits of Detection	Optical Microscopy Part 1d: Noise Sources in Light Detection	Optical Microscopy Part 2: Fluorescence Microscopy
Optical Microscopy Part 2b: High Resolution Microscopy Techniques	Optical Microscopy Part 3: Particle Tracking	Optical Microscopy Part 3: Particle Tracking Applications
Optical Microscopy Part 3: Resolution, Stability, and Particle Tracking	Optical Microscopy Part 3: Resolution and Stability	Optical Microscopy Part 3a: Particle Tracking
Optical Microscopy Part 3a: Particle Tracking in Glycerin Samples	Optical Microscopy Part 3b: Microrheology Measurements in Fibroblast Cells	Optical Microscopy Part 3b: Microrheology Measurements in Live Fibroblast Cells
Optical Microscopy Part 3c: Fluorescence Imaging of Actin Cytoskeleton	Optical Microscopy Part 3c: Protocols for cell culture, cell fixing and cell imaging	Optical Microscopy Part 4: Microrheology Measurements in Fibroblast Cells
Optical Microscopy Part 4: Particle Tracking	Optical Microscopy Week 1: Bright Field Microscopy	Optical Microscopy Week 1: Brightfield Microscopy
Optical Microscopy Week 1: Build a brightfield microscope	Optical Microscopy Week 2: Fluorescence Microscopy	Optical Microscopy Week 3: Experiments
Optical Microscopy Week 3: Particle Tracking	Optical Microscopy Week 4: Microrheology Measurements in Fibroblast Cells	Optical Trap Code
Optical Trap Graphs	Optical aberrations	Optical detectors, noise, and the limit of detection
Optical microscopy lab wiki pages	Optical resolution	Optical trap
Optics Bootcamp	Papers	Papers to read
Part 3 Combined Report Outline	Particle Tracking Exercise	Photobleaching Model
Physical optics and resolution	Power spectral density	Probability and statistics
Problem Set 1	Problem Set 2	Problem Set 2 Fall 2010
Procedure: Diffusion in biological gels	Procedure: Particle tracking	Procedure: Peptide-DNA Tethering Assay
Project ideas	Protocols	Protocols for cell culture
Protocols for cell culture, fixing and imaging	Protocols for making microscopy samples	Python:DNA melting data analysis
Python:Simulating DNA Melting	QRT-PCR	QRT-PCR:Get Started
QRT-PCR:Heated Lid	QRT-PCR:LabView-versions	Real electronics
Recording, displaying and saving images in MATLAB	Reference List	Relay Lens Example
Resource List:Electronics	Resource List:Suppliers	Resource list:DNA melting and PCR
Resource list:Electronics	Resource list:Magnetic Resonance Imaging	Resource list:Optical trapping
Resource list:Optics	Resource list:Suppliers	Resource list: DNA melting and PCR
Resource list: Electronics	Resource list: Fiber optics	Resource list: Image Enhancement
Resource list: Image processing	Resource list: Magnetic Resonance Imaging	Resource list: Matlab
Resource list: Microscopy	Resource list: Optical trapping	Resource list: Optics
Resource list: Particle tracking	Resource list: Suppliers	Results
Review of probability concepts	SToNCalculator.m	Sandbox
Save the curve to a USB memory stick	Shot noise and centroid finding	Simulating diffusing microspheres in MATLAB
Spring09/Todo	Spring09:Todo list	Spring 11:CellPrinter
Spring 11:Chemotaxis Assay	Spring 11:Confocal Microscope	Spring 11:Directed Evolution
Spring 11:Directed Evolution/KAF95	Spring 11:Directed Evolution/Perfusion Chambers	Spring 11:Directed Evolution/Week of 3-14-2011 Status
Spring 11:Directed Evolution/Week of 3-21-2011 Status	Spring 11:Directed Evolution/Week of 3-28-2011 Status	Spring 11:Directed Evolution/Week of 4-04-2011 Status
Spring 11:Directed Evolution/Week of 4-11-2011 Status	Spring 11:Directed Evolution/Week of 4-18-2011 Status	Spring 11:Directed Evolution/Week of 4-25-2011 Status
Spring 11:Directed Evolution/Week of 5-02-2011 Status	Spring 11:Directed Evolution/Week of 5-09-2011 Status	Spring 11:QRT-PCR
Spring 11:QRT-PCR: Progress Notes	Spring 11:QRT-PCR weekly reports	Spring 11:SMR
Spring 11:eSTORM	Spring 11 ChemotaxisAssayWeeklyReports	Spring 11 Chemotaxis Assay Weekly Reports
Spring 2011:3D PSF lab	Spring 2011:3D PSF lab:Kristin	Spring 2011:CellFinder
Spring 2011:Optical Trapping Lab	Spring 2012:LFM	Spring 2012:LFM Documentation
Spring 2012:LFM Extra	Spring 2012:LFM Literature	Spring 2012:LFM Proposal
Spring 2012:LFM Report	Spring 2012:Leanna Morinishi	Spring 2012:Leanna Morinishi Journal
Spring 2012:Leanna Morinishi LFM	Spring 2012:Leanna Morinishi Lab 1	Spring 2012:Leanna Morinishi Lab 2
Spring 2012:Leanna Morinishi Lit Search	Spring 2012:PSF lab	Spring 2012:Snot
Spring 2012:Vincent Lee Journal	Spring 2012:Vincent Lee Lab 1	Spring 2012:Vincent Lee Lab 2
Spring 2012: Ajoke Jumoke Williams	Spring 2012: Jonathan Gootenberg	Spring 2012: Jonathan Gootenberg FinProject
Spring 2012: Jonathan Gootenberg Journal	Spring 2012: Jonathan Gootenberg Lab 2	Spring 2012: Jonathan Gootenberg STORM
Spring 2012: Real Time qPCR	Spring 2012: Vincent Lee	Spring 2012: Williams Key Factors Table
Spring 2012 Bioinstrumentation Project Lab	Spring 2012 Bioinstrumentation Project Lab.	Spring 2020 Assignment 10
Spring 2020 Assignment 6	Spring 2020 Assignment 7	Spring 2020 Assignment 8
Spring 2020 Assignment 9	Spring 2020 assignment 10	Status Report Interrogatories (Spring 2012)
Super resolution microscopy	TableTop MRI	Technical Writing
Temporary Optics Bootcamp	Theory	Thermal Quenching Model
ThorLabs OTKB optical trapping kit	Todo List	Troubleshooting
Two-color Yeast Protocols	Understanding log plots	Understanding the lock-in amplifier
Using CRISPRi to increase ethanol yield in E. coli MG1655	Using nonlinear regression to create a camera specification sheet	Using tfest to find a system model
Weekly Progress Reports	Weekly Updates	Wikibodeplots.m
Williams: Optical Trapping Lab 1	Williams: PSF and Deconvolution Lab 2

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