Difference between revisions of "Optical Microscopy Part 4: Particle Tracking"
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===System Verification=== | ===System Verification=== | ||
| + | To verify that your system is suficiently rigid/stable, first measure a specimen containing red | ||
| + | fluorescent beads (Molecular Probes) dried in a cell dish. Chose a field of view in which you can | ||
| + | see at least 3-4 beads. Using a 40x objective record an .avi movie for about 3 min. at a frame | ||
| + | rate of 30 frames/sec. | ||
| + | From your experience with image processing, you already know how to import .avi movie data | ||
| + | into matlab. To improve signal to noise ratio, sum every 30 frames together, which will make your | ||
| + | sequence have a temporal interval of 1 sec. | ||
| + | Use the bead tracking processing algorithm on two beads to calculate two trajectories. To | ||
| + | further reduce common-mode motion from room vibrations, calculate the differential trajectory | ||
| + | from the individual trajectories of these two beads. Calculate the MSD <<math>\Delta r^2</math>> from this differential | ||
| + | trajectory. Your MSD should start out less than 10 nm<math>^2</math> at <math>\tau</math> = 1 sec and still be less than 100 nm<math>^2</math> for <math>\tau</math> = 180 sec. If you don't get this, do not proceed further and ask for help. | ||
===Live Cell Measurements=== | ===Live Cell Measurements=== | ||
Revision as of 21:39, 27 August 2012
Introduction and Background
Need to input a bunch of equations.
Experiment Details
Stability and Setup
The major challenge of particle tracking microrheometery is the small scale of the thermal forces and the associated nanometer scale displacements. A few things you can do to ensure the experiment works: Be sure all the microscope components are rigidly assembled and firmly tightened. Poorly built scopes shake. It is also vital that when you perform this experiment that the optical tables are floating so that building noise is isolated. Of course, avoid touching the optical table and the microscope during the measurement. There are also cardboard boxes available that you can put over your microscope to isolate it from air currents. Finally, make sure that you and the people around you are not talking too loudly during the experiment, because acoustic noise is significant.
System Verification
To verify that your system is suficiently rigid/stable, first measure a specimen containing red fluorescent beads (Molecular Probes) dried in a cell dish. Chose a field of view in which you can see at least 3-4 beads. Using a 40x objective record an .avi movie for about 3 min. at a frame rate of 30 frames/sec. From your experience with image processing, you already know how to import .avi movie data into matlab. To improve signal to noise ratio, sum every 30 frames together, which will make your sequence have a temporal interval of 1 sec. Use the bead tracking processing algorithm on two beads to calculate two trajectories. To further reduce common-mode motion from room vibrations, calculate the differential trajectory from the individual trajectories of these two beads. Calculate the MSD <$ \Delta r^2 $> from this differential trajectory. Your MSD should start out less than 10 nm$ ^2 $ at $ \tau $ = 1 sec and still be less than 100 nm$ ^2 $ for $ \tau $ = 180 sec. If you don't get this, do not proceed further and ask for help.
Live Cell Measurements
References
