Difference between revisions of "20.109(S21):Spring 2021 schedule"

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| R/F Apr 1/2
 
| R/F Apr 1/2
 
| [http://be.mit.edu/directory/angela-koehler AK] <br>  
 
| [http://be.mit.edu/directory/angela-koehler AK] <br>  
−
| [[20.109(S21):M2D4 | ]] <br>
+
| [[20.109(S21):M2D4 |Placeholder ]] <br>
 
| <font color= #d1b217 >'''Laboratory quiz'''</font color> <br> [[20.109(S21):Homework#Due_M2D4|Homework due]]<br>[[20.109(S21):Mini-presentation| <font color =  #b3251c>'''Mini-presentation due'''</font color>]] XXX at 10 pm
 
| <font color= #d1b217 >'''Laboratory quiz'''</font color> <br> [[20.109(S21):Homework#Due_M2D4|Homework due]]<br>[[20.109(S21):Mini-presentation| <font color =  #b3251c>'''Mini-presentation due'''</font color>]] XXX at 10 pm
 
|--
 
|--
 
|  
 
|  
−
| <font color = 999999>T/W Oct 13/14</font color>
+
| T/W Apr 6/7
 +
|
 +
| [[20.109(S21):Journal club presentation| <font color = #b3251c>'''Journal club presentations'''</font color>]]
 
|  
 
|  
−
| <font color = #0d368e>'''Indigenous Peoples Day holiday'''</font color>
+
|--
−
| [[20.109(F20):Data Summary| <font color =  #b3251c>'''Data Summary revision due'''</font color>]] Wed, Oct 14 at 10 pm
+
|
 +
| R/F Apr 8/9
 +
|
 +
| [[20.109(S21):Journal club presentation| <font color =  #b3251c>'''Journal club presentations'''</font color>]]
 +
| [ Blog post due] XXX at 10 pm
 
|--
 
|--
 
| M2D5
 
| M2D5
−
| R/F Oct 15/16
+
| T/W Apr 13/14
−
| [http://be.mit.edu/directory/jacquin-c-niles JN]<br> [https://mit.zoom.us/j/93419708072 Zoom access] <br> [https://mit.zoom.us/rec/share/FpZHKp2wbeQg_JjcZDHQ8vp2Swy9OviSf75xauagT482Lujhy3iFnYq2U31IF_pH.qFJ44GM9YBVxuRDO Video] <br> [https://www.dropbox.com/sh/dz4jlc1b4kkmiqe/AADQWbknjnrRIbpTXpbY6GoDa?dl=0 Slides]
+
| [http://be.mit.edu/directory/angela-koehler AK] <br>  
−
| [[20.109(F20):M2D5 | Scan SMM slides to identify putative small molecule binders]]<br>[https://mit.zoom.us/j/97716476442 T/R Zoom access], [https://mit.zoom.us/rec/play/W2Ok0vZcxN4kU_xMz6uCjZUjrXNJWcxGeZYGaYSq5lfRm2iscXp8iGZLR2gHr0xaLqc5A6D66k4C3eOQ.dsuGTbxPFrr38-HT?autoplay=true&continueMode=true&startTime=1602792632000 T/R prelab video], [[Media:Fa20 M2D5 bcm.pdf | T/R prelab slides]] <br> [https://mit.zoom.us/j/96606548971 W/F Zoom access], [https://mit.zoom.us/rec/share/qRa5VRy-05qtGJ6TI3nx0yqjht3TUQOMFj72c-FMziY512hUj8ThR9-E14ae3gtB.8dhG663QBfypUeJW  W/F prelab video], [https://www.dropbox.com/sh/x76rndhhltlxh8f/AAAddzBoW0xL5h0H6LT1ZipSa?dl=0 W/F prelab slides] <br>
+
| [[20.109(S21):M2D5 |Placeholder ]]
−
| [[20.109(F20):Homework#Due_M2D5|Homework due]]<br>
+
| [[20.109(S21):Homework#Due_M2D5|Homework due]]<br>
 +
|--
 +
| M2D6
 +
| R/F Apr 15/16
 +
| [http://be.mit.edu/directory/angela-koehler AK] <br>  
 +
| [[20.109(S21):M2D6 |Placeholder ]] <br>
 +
| [[20.109(S21):Homework#Due_M2D6|Homework due]]<br>
 
|--
 
|--
 
|  
 
|  
−
| T/W Oct 20/21
+
| <font color = 999999>T/W Apr 20/21 </font color>
 
|  
 
|  
−
| [[20.109(F20):Journal club presentation| <font color = #b3251c>'''Journal club presentations'''</font color>]]
+
| <font color = #0d368e>'''Student holiday'''</font color>
 
|  
 
|  
−
|--
 
−
|
 
−
| R/F Oct 22/23
 
−
|
 
−
| [[20.109(F20):Journal club presentation| <font color =  #b3251c>'''Journal club presentations'''</font color>]]
 
−
| [https://be20109f20blog.blogspot.com/ Blog post due] Sun, Oct 25 at 10 pm
 
−
|--
 
−
| M2D6
 
−
| T/W Oct 27/28
 
−
| [http://be.mit.edu/directory/jacquin-c-niles JN]<br> [https://mit.zoom.us/j/93419708072 Zoom access] <br> [https://mit.zoom.us/rec/share/vcUUIslbuwKrKE9nCwC4u6CND6Thj0Y3wnats9mDjlhKZ0yUZ5U95xtp2B_5w6ag.heMvV0Dlw-ApbUeo  Video] <br> [https://www.dropbox.com/sh/dz4jlc1b4kkmiqe/AADQWbknjnrRIbpTXpbY6GoDa?dl=0 Slides]
 
−
| [[20.109(F20):M2D6 | Analyze SMM data to confirm putative small molecule binders]]<br>[https://mit.zoom.us/j/97716476442 T/R Zoom access], [https://mit.zoom.us/rec/play/8_-yqEhoAEX50nYcC9IB3LX4Rrv0cu6zISlQ57j5HWM687ZHTbUuOs5v3O-HoNT3jthF5RCPbN1GOvaI.BPfydOr9-E1hPjiW?continueMode=true T/R prelab video], [https://www.dropbox.com/s/cfusa6z8z2bvqfs/Fa20_M2D6_bcm.pdf?dl=0 T/R prelab slides] <br> [https://mit.zoom.us/j/96606548971 W/F Zoom access], [https://mit.zoom.us/rec/share/eempA_2TXzs_mEWr71f_xh8AFjzYp0hN1QXfHY8GoI_FgQpXwhq8kaoPMMaPSPWc.jdX3w_22eE0V57eQ  W/F prelab video], [https://www.dropbox.com/sh/x76rndhhltlxh8f/AAAddzBoW0xL5h0H6LT1ZipSa?dl=0 W/F prelab slides] <br>
 
−
| [[20.109(F20):Homework#Due_M2D6|Homework due]]<br>
 
 
|--
 
|--
 
| M2D7
 
| M2D7
−
| R/F Oct 29/30
+
| R/F Apr 22/23
−
| [http://be.mit.edu/directory/jacquin-c-niles JN]<br> [https://mit.zoom.us/j/93419708072 Zoom access] <br> [https://mit.zoom.us/rec/share/slcV6QJeOUZLOLhuhc0xtGumIQpVvKEIwOwKAc7ijTykj6DL3Ls1tPdzH7GXgQAM.-pR5_VvBe6j_0QKR  Video] <br> [https://www.dropbox.com/sh/dz4jlc1b4kkmiqe/AADQWbknjnrRIbpTXpbY6GoDa?dl=0 Slides]
+
| [http://be.mit.edu/directory/angela-koehler AK] <br>  
−
| [[20.109(F20):M2D7 | Examine putative small molecule binders for common features]] <br>[https://mit.zoom.us/j/97716476442 T/R Zoom access], [https://mit.zoom.us/rec/share/yX05CxSRGxVxKAE610t1MLgqyS8P4QNWarHrGZF_zRUAtwoz7mewijJBmKd41GDP.O-Dl6JacT-9O5Yua  T/R prelab video], [[Media:Fa20 M2D7 bcm.pdf | T/R prelab slides]] <br> [https://mit.zoom.us/j/96606548971 W/F Zoom access], [https://mit.zoom.us/rec/share/4PO_9K9EBOPjHoqvrWb0Kd4lo5_-IumrX9m7EVS6cKO_cizpA2G7rChJlRYnUpUL.f7y2GB8XlhodLOc4  W/F prelab video], [https://www.dropbox.com/sh/x76rndhhltlxh8f/AAAddzBoW0xL5h0H6LT1ZipSa?dl=0 W/F prelab slides] <br>
+
| [[20.109(S21):M2D7 |Placeholder ]] <br>
−
| <font color= #829c58 >'''Laboratory quiz'''</font color><br>[[20.109(F20):Homework#Due_M2D7|Homework due]]<br>
+
| <font color= #d1b217 >'''Laboratory quiz'''</font color> <br> [[20.109(S21):Homework#Due_M2D7|Homework due]]<br>
 
|--
 
|--
 
| colspan="6" |
 
| colspan="6" |
 
|--
 
|--
 
| M3D1
 
| M3D1
−
| T/W Nov 3/4
+
| T/W Apr 27/28
−
| [http://be.mit.edu/directory/noreen-lyell NLL]<br> [https://mit.zoom.us/j/93419708072 Zoom access] <br> [https://mit.zoom.us/rec/share/pr1Lh3PdwHqXfXlZX6IZTsdko_o_o2ARRKptp13yX4mhMLcAPG8jloLukAduKGX4.Xalztna5UiIkG7V8  Video] <br> [https://www.dropbox.com/sh/blb2r826you6m90/AABEGALoCTYkFzq6mOwHxv7ua?dl=0 Slides]
+
| [ AJ] <br>  
−
| [[20.109(F20):M3D1 | Research project scope and experimental strategy]]<br>[https://mit.zoom.us/j/97716476442 T/R Zoom access], [https://mit.zoom.us/rec/share/kA99Bku1xgI1bMCUZxwGi5Hn54XDzor5WDzjgxn8nl9LFk7J3SdugLTWu782U7NI.sHKOjEL7KeBctF6Z T/R prelab video], [https://www.dropbox.com/s/axbpqvvfszxh8ww/Fa20_M3D1_bcm.pdf?dl=0 T/R prelab slides] <br> [https://mit.zoom.us/j/96606548971 W/F Zoom access], [https://mit.zoom.us/rec/share/uKWJpE6Cbc4Psr5grP8wLbNGp69neHf2u4cj5sACBo64YUgWnchH_VfhYnNkXmF1.fnTViBGY4GxXvII0  W/F prelab video], [https://www.dropbox.com/sh/x76rndhhltlxh8f/AAAddzBoW0xL5h0H6LT1ZipSa?dl=0 W/F prelab slides]<br>
+
| [[20.109(S21):M3D1 |Placeholder ]] <br>
−
| [[20.109(F20):Homework#Due_M3D1|Homework due]]<br>
+
| [[20.109(S21):Homework#Due_M3D1|Homework due]]<br>
 
|--
 
|--
 
| M3D2
 
| M3D2
−
| R/F Nov 5/6
+
| R/F Apr 29/30
−
| [http://be.mit.edu/directory/noreen-lyell NLL]<br> [https://mit.zoom.us/j/93419708072 Zoom access] <br> [https://mit.zoom.us/rec/share/l2sVJO3Qc6bNYW-z3IThzEaDAuH5bemK5FgWet6fMMyjR7uIHz_64hYqiUTR9_4W.VDz0bOpLgngz6fef  Video] <br> [https://www.dropbox.com/sh/blb2r826you6m90/AABEGALoCTYkFzq6mOwHxv7ua?dl=0 Slides]
+
| [ ]<br>  
−
| [[20.109(F20):M3D2 | Align gRNA sequences with genomic targets]]<br>[https://mit.zoom.us/j/97716476442 T/R Zoom access], [https://mit.zoom.us/rec/play/UUyYGXorRbiYzHFfhUWmutGqSG8pRp2ZvlvNrcXsUN7rqautmBwXTnQWzqKEw5XmfwBMwzhr_yDgaJzv.NNEUUQZe3ljsrdEH?continueMode=true T/R prelab video], [[Media:Fa20 M3D2 bcm.pdf | T/R prelab slides]] <br> [https://mit.zoom.us/j/96606548971 W/F Zoom access], [https://mit.zoom.us/rec/share/jxvUTG-22lSFcbZmIdjJNcFEzELqyQR2RpgmrUChfvLGsXx0U0cQ17zwYieNORNX.aodbZIjNPmFC6gLa  W/F prelab video], [https://www.dropbox.com/sh/x76rndhhltlxh8f/AAAddzBoW0xL5h0H6LT1ZipSa?dl=0 W/F prelab slides]<br>
+
| [[20.109(S21):M3D2 |Placeholder ]] <br>
−
| [[20.109(F20):Homework#Due_M3D2|Homework due]]
+
| [[20.109(S21):Homework#Due_M3D2|Homework due]]
−
|--
+
−
|
+
−
| <font color = 999999>T/W Nov 10/11</font color>
+
−
|
+
−
| <font color = #0d368e>'''Veterans day holiday'''</font color>
+
−
| [[20.109(F20):Research article| <font color =  #b3251c>'''Research article due'''</font color>]]  Wed, Nov 11 at 10 pm <br>[https://be20109f20blog.blogspot.com/ Blog post due] Thu, Nov 12 at 10 pm
+
 
|--
 
|--
 
| M3D3
 
| M3D3
−
| R/F Nov 12/13
+
| T/W May 4/5
−
| [http://be.mit.edu/directory/noreen-lyell NLL]<br> [https://mit.zoom.us/j/93419708072 Zoom access] <br> [https://mit.zoom.us/rec/share/xL1iREP5-pvvL4WMFiafAFfdUlLrZgSZpYsrDaQoqM9d4ymSGQNS4wHFn8nLZ343.rYWIpbR3gIz5RHNz Video] <br> [https://www.dropbox.com/sh/blb2r826you6m90/AABEGALoCTYkFzq6mOwHxv7ua?dl=0 Slides]
+
| [] <br>  
−
| [[20.109(F20):M3D3 | Analyze ethanol yield data]]<br>[https://mit.zoom.us/j/97716476442 T/R Zoom access], [ T/R prelab video], [[ T/R prelab slides]] <br> [https://mit.zoom.us/j/96606548971 W/F Zoom access], [ W/F prelab video], [[ W/F prelab slides]] <br>
+
| [[20.109(S21):M3D3 |Placeholder ]] <br>
−
| <font color= #829c58 >'''Laboratory quiz'''</font color><br>[[20.109(F20):Homework#Due_M3D3|Homework due]]<br>
+
| <font color= #d1b217 >'''Laboratory quiz'''</font color> <br> [[20.109(S21):Homework#Due_M3D3|Homework due]]<br>
 
|--  
 
|--  
 
|  
 
|  
−
| T/W Nov 17/18
+
| R/F May 6/7
−
| Research proposal pitches <br> [https://mit.zoom.us/j/93419708072 Zoom access] <br>
+
| Research proposal pitches <br>  
−
| Develop Research proposal ideas and presentations <br>[https://mit.zoom.us/j/97716476442 T/R Zoom access]<br> [https://mit.zoom.us/j/96606548971 W/F Zoom access]
+
| Develop Research proposal ideas and presentations  
 
|
 
|
 
|--
 
|--
 
| M3D4
 
| M3D4
−
| R/F Nov 19/20
+
| T/W May 11/12
−
| [http://be.mit.edu/directory/noreen-lyell NLL]<br> [https://mit.zoom.us/j/93419708072 Zoom access] <br> [ Video] <br> [https://www.dropbox.com/sh/blb2r826you6m90/AABEGALoCTYkFzq6mOwHxv7ua?dl=0 Slides]
+
| [] <br>  
−
| [[20.109(F20):M3D4 | Examine features in gRNA-targeted genomic sequences]]<br>[https://mit.zoom.us/j/97716476442 T/R Zoom access], [ T/R prelab video], [[ T/R prelab slides]] <br> [https://mit.zoom.us/j/96606548971 W/F Zoom access], [ W/F prelab video], [[ W/F prelab slides]] <br>
+
| [[20.109(S21):M3D4 |Placeholder ]] <br>
−
| [[20.109(F20):Homework#Due_M3D4|Homework due]]
+
| [[20.109(S21):Homework#Due_M3D4|Homework due]]
−
|--
+
−
|
+
−
| <font color = 999999>T/W Nov 24/25</font color>
+
−
|
+
−
| <font color = #0d368e>'''Thanksgiving holiday'''</font color>
+
−
|
+
−
|--
+
−
|
+
−
| <font color = 999999>R/F Nov 26/27</font color>
+
−
|
+
−
| <font color = #0d368e>'''Thanksgiving holiday'''</font color>
+
−
|
+
 
|--
 
|--
 
| M3D5
 
| M3D5
−
| T/W Dec 1/2
+
| R/F May 13/14
−
| [http://be.mit.edu/directory/noreen-lyell NLL]<br> [https://mit.zoom.us/j/93419708072 Zoom access] <br> [ Video] <br> [https://www.dropbox.com/sh/blb2r826you6m90/AABEGALoCTYkFzq6mOwHxv7ua?dl=0 Slides]
+
| [] <br>  
−
| [[20.109(F20):M3D5 | Design optimized gRNA sequence for enhanced ethanol production]]<br>[https://mit.zoom.us/j/97716476442 T/R Zoom access], [ T/R prelab video], [[ T/R prelab slides]] <br> [https://mit.zoom.us/j/96606548971 W/F Zoom access], [ W/F prelab video], [[ W/F prelab slides]] <br>
+
| [[20.109(S21):M3D5 |Placeholder ]] <br>
−
| <font color= #829c58 >'''Laboratory quiz'''</font color><br>[[20.109(F20):Homework#Due_M3D5|Homework due]]
+
| <font color= #d1b217 >'''Laboratory quiz'''</font color ><br> [[20.109(S21):Homework#Due_M3D5|Homework due]]
 
|--
 
|--
 
|  
 
|  
−
| R/F Dec 3/F
+
| T/W May 18/19
 
|  
 
|  
−
| [[20.109(F20):Research proposal presentation| <font color =  #b3251c>'''Research proposal presentations'''</font color>]]
+
| [[20.109(S21):Research proposal presentation| <font color =  #b3251c>'''Research proposal presentations'''</font color>]]
−
| [https://be20109f20blog.blogspot.com/ Blog post due] Fri, Dec 4 at 10 pm
+
| [ Blog post due] XXX at 10 pm
 
|--
 
|--
 
| colspan="6" |
 
| colspan="6" |
 
|--
 
|--
 
|  
 
|  
−
| T Dec 8
+
| R May 20
 
|  
 
|  
−
| <font color =  #0d368e>'''Feedback session'''</font color><br> [https://mit.zoom.us/j/93419708072 Zoom access] <br>
+
| <font color =  #0d368e>'''Feedback session'''</font color> <br>  
−
| [[20.109(F20):Mini-report | <font color =  #b3251c>'''Mini-report due'''</font color>]] Mon, Dec 7 at 10 pm <br>
+
| [[20.109(S21):Mini-report | <font color =  #b3251c>'''Mini-report due'''</font color>]] XXX at 10 pm <br>
 
|}
 
|}
 
</div>
 
</div>

Revision as of 20:56, 13 November 2020

20.109(S21): Laboratory Fundamentals of Biological Engineering

Sp21 banner image v2.png

Spring 2021 schedule        FYI        Assignments        Homework        Communication |        Accessibility

       M1: Antibody engineering        M2: Drug discovery        M3: Protein engineering       


Welcome to 20.109! It is our goal to make this class a useful and fun introduction to the experiments and techniques used in biological engineering. Though there is not time enough to show you everything needed to do research, after this class you will feel confident and familiar with some fundamental experimental approaches and laboratory protocols. You will develop good habits at the bench, which will increase the likelihood of success in your work and ensure the health and safety of you and your labmates. By the end of the semester, you will also be well-versed in good scientific practices - through your experience with scientific writing, notebook keeping, and orally presenting data and novel ideas. All of us involved in teaching 20.109 hope you will find it a satisfying challenge and an exciting experience that has lasting value.

SCHEDULE DETAILS:
Lecture times:

  • Tuesday (T) and Thursday (R) 11 - 12 pm ([ Zoom access)]

Laboratory section times:

  • Tuesday (T) and Thursday (R) 1 - 5 pm ([ Zoom access])
  • Wednesday (W) and Friday (F) 1 - 5 pm ([ Zoom access])
MODULE DATE LECTURER LABORATORY EXPERIMENTS ASSIGNMENTS
T/W Feb 16/17 NLL
Slides 		Orientation and laboratory tour
M1D1 R/F Feb 18/19 LM
Placeholder Orientation quiz
Homework due
M1D2 T/W Feb 23/24 LM
Placeholder
Homework due
M1D3 R/F Feb 25/26 LM
Placeholder
Homework due
M1D4 T/W Mar 2/3 LM
Placeholder
Laboratory quiz
Homework due
M1D5 R/F Mar 4/5 LM
Placeholder
Homework due
T/W Mar 9/10 Student holiday
M1D6 R/F Mar 11/12 LM
Placeholder
Homework due
M1D7 T/W Mar 16/17 LM
Placeholder
Laboratory quiz
Homework due
M2D1 R/F Mar 18/19 AK
Placeholder
Homework due
T/W Mar Mar 23/24 Student holiday
M2D2 R/F Mar 25/26 AK
Placeholder
Homework due
Data Summary draft due XXX at 10 pm
[ Blog post due] XXX at 10 pm
M2D3 T/W Mar 30/31 AK
Placeholder
Homework due
M2D4 R/F Apr 1/2 AK
Placeholder
Laboratory quiz
Homework due
Mini-presentation due XXX at 10 pm
T/W Apr 6/7 Journal club presentations
R/F Apr 8/9 Journal club presentations [ Blog post due] XXX at 10 pm
M2D5 T/W Apr 13/14 AK
Placeholder Homework due
M2D6 R/F Apr 15/16 AK
Placeholder
Homework due
T/W Apr 20/21 Student holiday
M2D7 R/F Apr 22/23 AK
Placeholder
Laboratory quiz
Homework due
M3D1 T/W Apr 27/28 [ AJ]
Placeholder
Homework due
M3D2 R/F Apr 29/30 [ ]
 Placeholder
Homework due
M3D3 T/W May 4/5 []
Placeholder
Laboratory quiz
Homework due
R/F May 6/7 Research proposal pitches
Develop Research proposal ideas and presentations
M3D4 T/W May 11/12 []
Placeholder
Homework due
M3D5 R/F May 13/14 []
Placeholder
Laboratory quiz
Homework due
T/W May 18/19 Research proposal presentations [ Blog post due] XXX at 10 pm
R May 20 Feedback session
Mini-report due XXX at 10 pm
Retrieved from "http://engineerbiology.org/w/index.php?title=20.109(S21):Spring_2021_schedule&oldid=45930"