Difference between revisions of "20.109(S20):Class data"
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BCA Assay results (A<sub>562</sub> measurements): [[Media:Sp20_TR_BCA.xlsx| linked here]] | BCA Assay results (A<sub>562</sub> measurements): [[Media:Sp20_TR_BCA.xlsx| linked here]] | ||
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SDS-PAGE results: | SDS-PAGE results: | ||
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*White Team: [[Media:Sp20 TR White SDSPAGE.HEIC |image here]] | *White Team: [[Media:Sp20 TR White SDSPAGE.HEIC |image here]] | ||
*Grey Team: [[Media:Sp20 TR Grey SDSPAGE.HEIC |image here]] | *Grey Team: [[Media:Sp20 TR Grey SDSPAGE.HEIC |image here]] | ||
+ | |||
+ | LiCOR Alexa 647 results: | ||
+ | *Red Team: [[Media:Sp20 TR Red.tif |image here]] | ||
+ | *Orange Team: [[Media:TR Orange Licor.tif |image here]] | ||
+ | *Yellow Team: [[Media:TR Yellow Licor.tif |image here]] | ||
+ | *Green Team: [[Media:TR Green Licor.tif |image here]] | ||
+ | *Blue Team: [[Media:TR Red Licor.tif |image here]] | ||
+ | *Pink Team: [[Media:TR Pink Licor.tif |image here]] | ||
+ | *Purple Team: [[Media:TR Purple Licor.tif |image here]] | ||
+ | *White Team: [[Media:TR White Licor.tif |image here]] | ||
+ | *Grey Team: [[Media:TR Grey Licor.tif |image here]] | ||
+ | |||
+ | ====WF Section==== | ||
+ | |||
+ | BCA Assay results (A<sub>562</sub> measurements): [[Media:Sp20 WF BCA.xlsx| linked here]] | ||
+ | |||
+ | SDS-PAGE results: | ||
+ | *Red Team: [[Media:WF Red SDS.tif |image here]] | ||
+ | *Orange Team: [[Media:WF Orange SDS.tif |image here]] | ||
+ | *Yellow Team: [[Media:WF Yellow SDS.tif |image here]] | ||
+ | *Green Team: [[Media:WF Green SDS.tif |image here]] | ||
+ | *Light Blue Team: [[Media:WF Blue SDS.tif |image here]] | ||
+ | *Pink Team: [[Media:WF Pink SDS.tif |image here]] | ||
+ | *Purple Team: [[Media:WF Purple SDS.tif |image here]] | ||
+ | *White Team: [[Media:WF White SDS.tif |image here]] | ||
+ | *Silver Team: [[Media:WF Silver SDS.tif |image here]] | ||
+ | |||
+ | LiCOR Alexa 647 results: | ||
+ | *Red Team: [[Media:Sp20 WF Red.tif |image here]] | ||
+ | *Orange Team: [[Media:Licor WF Orange.tif |image here]] | ||
+ | *Yellow Team: [[Media:Licor WF Yellow.tif |image here]] | ||
+ | *Green Team: [[Media:Licor WF Green.tif |image here]] | ||
+ | *Blue Team: [[Media:Licor WF Blue.tif |image here]] | ||
+ | *Pink Team: [[Media:Licor WF Pink.tif |image here]] | ||
+ | *Purple Team: [[Media:Licor WF Purple.tif |image here]] | ||
+ | *White Team: [[Media:Licor WF White.tif |image here]] | ||
+ | *Silver Team: [[Media:Licor WF Silver.tif |image here]] | ||
+ | |||
+ | ===M1D4: Perform small molecule microarray (SMM) with TDP43 protein=== | ||
+ | |||
+ | SMM slide assignments: | ||
+ | |||
+ | {| border="1" | ||
+ | |TR Team | ||
+ | |Slide barcodes | ||
+ | |WF Team | ||
+ | |Slide barcodes | ||
+ | |- | ||
+ | | Red | ||
+ | | 0011-03, 0011-04 | ||
+ | | Red | ||
+ | | 0011-11, 0013-11 | ||
+ | |- | ||
+ | | Orange | ||
+ | | 0012-09, 0012-10 | ||
+ | | Orange | ||
+ | | 0013-2, 0014-9 | ||
+ | |- | ||
+ | | Yellow | ||
+ | | 0012-05, 0012-06 | ||
+ | | Yellow | ||
+ | | 0013-1, 0014-1 | ||
+ | |- | ||
+ | | Green | ||
+ | | 0012-03, 0012-04 | ||
+ | | Green | ||
+ | | 0011-7, 0013-10 | ||
+ | |- | ||
+ | | Blue | ||
+ | | 0012-01, 0012-02 | ||
+ | | Blue | ||
+ | | 0013-12, 0014-12 | ||
+ | |- | ||
+ | | Pink | ||
+ | | 0012-03, 0012-04 | ||
+ | | Pink | ||
+ | | 0014-11, 0014-8 | ||
+ | |- | ||
+ | | Purple | ||
+ | | 0012-11, 0012-12 | ||
+ | | Purple | ||
+ | | 0013-9, 0014-10 | ||
+ | |- | ||
+ | | White | ||
+ | | 0011-05, 0011-06 | ||
+ | | White | ||
+ | | 0013-7, 0014-7 | ||
+ | |- | ||
+ | | Grey | ||
+ | | 0012-07, 0012-08 | ||
+ | | Silver | ||
+ | | 0011-8, 0011-12 | ||
+ | |} | ||
+ | |||
+ | ===M1D7: Evaluate class hits=== | ||
+ | *Red Team: [[ ]] | ||
+ | *Orange Team: [[ ]] | ||
+ | *Yellow Team: [[ ]] | ||
+ | *Green Team: [[ ]] | ||
+ | *Light Blue Team: [[ ]] | ||
+ | *Pink Team: [[ ]] | ||
+ | *Purple Team: [[ File:Top5Hits.xlsx]] | ||
+ | *White Team: [[ ]] | ||
+ | *Silver Team: [[ ]] | ||
==Module 2: Measuring gene expression== | ==Module 2: Measuring gene expression== | ||
+ | |||
+ | [[Media:Sp20 M2 qPCR pilot.xlsx | qPCR data]] | ||
==Module 3: Engineering antibodies== | ==Module 3: Engineering antibodies== | ||
+ | |||
+ | ===M3D3: Sequencing results=== | ||
+ | [[Media:Benchling_Aligning_to_template.docx |Benchling Sequence Alignment]]<br> | ||
+ | [[Media:Sp20M3_Clone2&5seq_abi.zip |Sequencing Data for Clone 2 and Clone 5]] | ||
+ | |||
+ | ===M3D5: Flow Cytometry Data=== | ||
+ | [[Media:Flow_Cytometry_Data_for_M3D5.zip|Flow Cytometry Data]] |
Latest revision as of 14:34, 21 April 2020
Contents
Module 1: Screening ligand binders
M1D3: Evaluate protein purity and concentration
TR Section
BCA Assay results (A562 measurements): linked here
SDS-PAGE results:
- Red Team: image here
- Orange Team: image here
- Yellow Team: image here
- Green Team: image here
- Blue Team: image here
- Pink Team: image here
- Purple Team: image here
- White Team: image here
- Grey Team: image here
LiCOR Alexa 647 results:
- Red Team: image here
- Orange Team: image here
- Yellow Team: image here
- Green Team: image here
- Blue Team: image here
- Pink Team: image here
- Purple Team: image here
- White Team: image here
- Grey Team: image here
WF Section
BCA Assay results (A562 measurements): linked here
SDS-PAGE results:
- Red Team: image here
- Orange Team: image here
- Yellow Team: image here
- Green Team: image here
- Light Blue Team: image here
- Pink Team: image here
- Purple Team: image here
- White Team: image here
- Silver Team: image here
LiCOR Alexa 647 results:
- Red Team: image here
- Orange Team: image here
- Yellow Team: image here
- Green Team: image here
- Blue Team: image here
- Pink Team: image here
- Purple Team: image here
- White Team: image here
- Silver Team: image here
M1D4: Perform small molecule microarray (SMM) with TDP43 protein
SMM slide assignments:
TR Team | Slide barcodes | WF Team | Slide barcodes |
Red | 0011-03, 0011-04 | Red | 0011-11, 0013-11 |
Orange | 0012-09, 0012-10 | Orange | 0013-2, 0014-9 |
Yellow | 0012-05, 0012-06 | Yellow | 0013-1, 0014-1 |
Green | 0012-03, 0012-04 | Green | 0011-7, 0013-10 |
Blue | 0012-01, 0012-02 | Blue | 0013-12, 0014-12 |
Pink | 0012-03, 0012-04 | Pink | 0014-11, 0014-8 |
Purple | 0012-11, 0012-12 | Purple | 0013-9, 0014-10 |
White | 0011-05, 0011-06 | White | 0013-7, 0014-7 |
Grey | 0012-07, 0012-08 | Silver | 0011-8, 0011-12 |
M1D7: Evaluate class hits
- Red Team: [[ ]]
- Orange Team: [[ ]]
- Yellow Team: [[ ]]
- Green Team: [[ ]]
- Light Blue Team: [[ ]]
- Pink Team: [[ ]]
- Purple Team: File:Top5Hits.xlsx
- White Team: [[ ]]
- Silver Team: [[ ]]
Module 2: Measuring gene expression
Module 3: Engineering antibodies
M3D3: Sequencing results
Benchling Sequence Alignment
Sequencing Data for Clone 2 and Clone 5