Difference between revisions of "20.109(S09): Module 2 oral presentations"
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− | For visibility, please use the following format to sign up if possible, substituting in your own initials and team colour: <font color = purple><b>[ANS/WF/Purple]</b></font color>. Thanks! | + | == Logistics of Paper Sign-Up and Presentation== |
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+ | *Once you have decided on a paper for your presentation, please email it to 20109.talk AT gmail DOT com, and also "reserve" it by putting your (initials/lab section/team color) next to the listing here. | ||
+ | *For visibility, please use the following format to sign up if possible, substituting in your own initials and team colour: <font color = purple><b>[ANS/WF/Purple]</b></font color>. Thanks! | ||
+ | *The same paper may be presented by a T/R and a W/F student, but may only be presented once per section. | ||
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+ | As you prepare your talk be sure to follow the [[20.109(S09):Guidelines for oral presentations| specific guidelines for oral presentations]] in this class. | ||
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+ | *Please email your finished journal club presentation to 20109.submit AT gmail DOT com no later than 1 pm on the day of your presentation. The order in which your presentations are received will be the order of speakers. | ||
+ | *Presentations will begin at 1:30 pm in room 16-336. | ||
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+ | ==Paper Options== | ||
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+ | The list of papers below is provided as a guideline for the types of papers that might be relevant for your presentation. You are not limited to the primary research articles on this list. The list is provided simply to give you an idea of the kinds of subjects that could make suitable presentations for the class. Search [http://ncbi.nih.gov/PubMed/ pubmed] yourself to find articles of interest to you. | ||
<font color=FF3300>Note: If you have trouble accessing your article directly, go to http://libraries.mit.edu/vera, which is MIT's collection of journals online. Try selecting "exact title" from the search pulldown menu if the name of your journal is a common word such as ''Science''. For older articles, you need to choose the JSTOR rather than Highwire interface.</font color> | <font color=FF3300>Note: If you have trouble accessing your article directly, go to http://libraries.mit.edu/vera, which is MIT's collection of journals online. Try selecting "exact title" from the search pulldown menu if the name of your journal is a common word such as ''Science''. For older articles, you need to choose the JSTOR rather than Highwire interface.</font color> | ||
− | ===RNAi in | + | ===RNAi in different cell types (besides murine, and tissue-specific examples)=== |
− | #Sharma SK, Nirenberg M. Silencing of genes in cultured Drosophila neurons by RNA interference. Proc Natl Acad Sci U S A. 2007 Jul 23 [http://www.ncbi.nlm.nih.gov/ | + | #Tomari Y, Du T, and Zamore PD. Sorting of Drosophila small silencing RNAs (2007). [http://www.ncbi.nlm.nih.gov/pubmed/17662944 pubmed link] |
− | #Nakatsuka T, Abe Y, Kakizaki Y, Yamamura S, Nishihara M. Production of red-flowered plants by genetic engineering of multiple flavonoid biosynthetic genes. Plant Cell Rep. 2007 Jul 17 [http://www.ncbi.nlm.nih.gov/ | + | #Sharma SK, Nirenberg M. Silencing of genes in cultured Drosophila neurons by RNA interference. Proc Natl Acad Sci U S A. 2007 Jul 23 [http://www.ncbi.nlm.nih.gov/pubmed/17646657 pubmed link] <font color = red><b>[MV/TR/Red]</b></font color> <font color = pink><b>[ASC/WF/Pink]</b></font color>. |
− | + | #Export of RNA silencing from C. elegans tissues does not require the RNA channel SID-1 (2009). [http://www.ncbi.nlm.nih.gov/pubmed/19168628 pubmed link] | |
− | #Gary DS, Davidson A, Milhavet O, Slunt H, Borchelt DR. Investigation of RNA interference to suppress expression of full-length and fragment human huntingtin. Neuromolecular Med. 2007;9(2):145-55.[http://www.ncbi.nlm.nih.gov/ | + | #Lu S, et al. RNA silencing in plants by the expression of siRNA duplexes (2004). [http://www.ncbi.nlm.nih.gov/pubmed/15576678 pubmed link] |
− | + | #Nakatsuka T, Abe Y, Kakizaki Y, Yamamura S, Nishihara M. Production of red-flowered plants by genetic engineering of multiple flavonoid biosynthetic genes. Plant Cell Rep. 2007 Jul 17 [http://www.ncbi.nlm.nih.gov/pubmed/17639403 pubmed link] | |
− | # Wang N, Sun YH, Liu J, Wu G, Su JG, Wang YP, Zhu ZY. Knock down of gfp and no tail expression in zebrafish embryo by in vivo-transcribed short hairpin RNA with T7 plasmid system. J Biomed Sci. 2007 Jul 12; | + | #Gary DS, Davidson A, Milhavet O, Slunt H, Borchelt DR. Investigation of RNA interference to suppress expression of full-length and fragment human huntingtin. Neuromolecular Med. 2007;9(2):145-55.[http://www.ncbi.nlm.nih.gov/pubmed/17627034 pubmed link]<font color = grey><b>[EG/TR/Grey]</b></font color><font color = yellow><b>[EP/WF/Yellow]</b></font color>. |
− | [http://www.ncbi.nlm.nih.gov/ | + | # Wang N, Sun YH, Liu J, Wu G, Su JG, Wang YP, Zhu ZY. Knock down of gfp and no tail expression in zebrafish embryo by in vivo-transcribed short hairpin RNA with T7 plasmid system. J Biomed Sci. 2007 Jul 12; [http://www.ncbi.nlm.nih.gov/pubmed/17624603 pubmed link] |
− | # Otani M, Hamada T, Katayama K, Kitahara K, Kim SH, Takahata Y, Suganuma T, Shimada T. Inhibition of the gene expression for granule-bound starch synthase I by RNA interference in sweet potato plants. Plant Cell Rep. 2007 Jul 12; [http://www.ncbi.nlm.nih.gov/ | + | # Otani M, Hamada T, Katayama K, Kitahara K, Kim SH, Takahata Y, Suganuma T, Shimada T. Inhibition of the gene expression for granule-bound starch synthase I by RNA interference in sweet potato plants. Plant Cell Rep. 2007 Jul 12; [http://www.ncbi.nlm.nih.gov/pubmed/17622537 pubmed link] |
− | #Serman A, Le Roy F, Aigueperse C, Kress M, Dautry F, Weil D. GW body disassembly triggered by siRNAs independently of their silencing activity. Nucleic Acids Res. 2007 Jun 29; [http://www.ncbi.nlm.nih.gov/ | + | #Serman A, Le Roy F, Aigueperse C, Kress M, Dautry F, Weil D. GW body disassembly triggered by siRNAs independently of their silencing activity. Nucleic Acids Res. 2007 Jun 29; [http://www.ncbi.nlm.nih.gov/pubmed/17604308 pubmed link] <font color = red><b>[alie/WF/Red]</b></font color>. |
− | #Kaushik Deb, Mayandi Sivaguru, Hwan Yul Yong, R. Michael Roberts Cdx2 Gene Expression and Trophectoderm Lineage Specification in Mouse Embryos Science. 2006 311:992 - 996 [http://www.ncbi.nlm.nih.gov/ | + | #Kaushik Deb, Mayandi Sivaguru, Hwan Yul Yong, R. Michael Roberts Cdx2 Gene Expression and Trophectoderm Lineage Specification in Mouse Embryos Science. 2006 311:992 - 996 [http://www.ncbi.nlm.nih.gov/pubmed/16484492 pubmed link] as well as [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=17656701&ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVAbstractPlus| retraction] |
− | #Jongpil Kim, Keiichi Inoue, Jennifer Ishii, William B. Vanti, Sergey V. Voronov, Elizabeth Murchison, Gregory Hannon, Asa Abeliovich A MicroRNA Feedback Circuit in Midbrain Dopamine Neurons Science 31 August 2007:Vol. 317. no. 5842, pp. 1220 - 1224 [http://www.ncbi.nlm.nih.gov/ | + | #Jongpil Kim, Keiichi Inoue, Jennifer Ishii, William B. Vanti, Sergey V. Voronov, Elizabeth Murchison, Gregory Hannon, Asa Abeliovich A MicroRNA Feedback Circuit in Midbrain Dopamine Neurons Science 31 August 2007:Vol. 317. no. 5842, pp. 1220 - 1224 [http://www.ncbi.nlm.nih.gov/pubmed/17761882 pubmed link]<font color = pink><b>[CY/TR/Pink]</b></font color> <font color = red><b>[Giulia/WF/Red]</b></font color>. |
− | #Zimmermann TS, Lee AC, Akinc A, Bramlage B, Bumcrot D, Fedoruk MN, Harborth J, Heyes JA, Jeffs LB, John M, Judge AD, Lam K, McClintock K, Nechev LV, Palmer LR, Racie T, | + | #Zimmermann TS, Lee AC, Akinc A, Bramlage B, Bumcrot D, Fedoruk MN, Harborth J, Heyes JA, Jeffs LB, John M, Judge AD, Lam K, McClintock K, Nechev LV, Palmer LR, Racie T, R hl I, Seiffert S, Shanmugam S, Sood V, Soutschek J, Toudjarska I, Wheat AJ, Yaworski E, Zedalis W, Koteliansky V, Manoharan M, Vornlocher HP, MacLachlan I.RNAi-mediated gene silencing in non-human primates. Nature. 2006 May 4;441(7089):111-4.[http://www.ncbi.nlm.nih.gov/pubmed/16565705 pubmed link] <font color = green><b>[ES/TR/Green]</b></font color><font color = grey><b>[MS/WF/Grey]</b></font color>. |
− | #Hiroshi Nakamura,1 Shahid S. Siddiqui,2 Xiang Shen,1 Asrar B. Malik,2 Jose S. Pulido,1 Nalin M. Kumar,1 Beatrice Y. J. T. Yue. RNA interference targeting transforming growth factor- | + | #Hiroshi Nakamura,1 Shahid S. Siddiqui,2 Xiang Shen,1 Asrar B. Malik,2 Jose S. Pulido,1 Nalin M. Kumar,1 Beatrice Y. J. T. Yue. RNA interference targeting transforming growth factor- |