Difference between revisions of "20.109: Spring 2007 schedule"
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| Tue Feb 6 | | Tue Feb 6 | ||
− | | [ | + | | [http://openwetware.org/wiki/Natalie_Kuldell | NK] |
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| [[20.109(S07):Lab tour | Orientation]] | | [[20.109(S07):Lab tour | Orientation]] | ||
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| 1 | | 1 | ||
| Thur Feb 8 | | Thur Feb 8 | ||
− | | [ | + | | [http://openwetware.org/wiki/Drew_Endy | DE] |
− | | [ | + | | [http://openwetware.org/wiki/Sean_Clarke | SC] |
| [[20.109(S07):Start-up genome engineering | Start-up genome engineering]] | | [[20.109(S07):Start-up genome engineering | Start-up genome engineering]] | ||
| [[Media:20109080207.pdf | PDF]] of class discussion slides | | [[Media:20109080207.pdf | PDF]] of class discussion slides | ||
Line 33: | Line 33: | ||
| 2 | | 2 | ||
| Tue Feb 13 | | Tue Feb 13 | ||
− | | [ | + | | [http://openwetware.org/wiki/Drew_Endy | DE] |
− | | [ | + | | [http://openwetware.org/wiki/Sean_Clarke | SC] |
| [[20.109(S07): Agarose gel electrophoresis| Agarose gel electrophoresis]] | | [[20.109(S07): Agarose gel electrophoresis| Agarose gel electrophoresis]] | ||
| [[Media:20109M1L2.pdf | PDF]] of class notes | | [[Media:20109M1L2.pdf | PDF]] of class notes | ||
Line 41: | Line 41: | ||
| 3 | | 3 | ||
| Thur Feb 15 | | Thur Feb 15 | ||
− | | [ | + | | [http://openwetware.org/wiki/Drew_Endy | DE] |
− | | [ | + | | [http://openwetware.org/wiki/Sean_Clarke | SC] |
− | | [ | + | | [http://openwetware.org/wiki/20.109(S07):_DNA_ligation_and_bacterial_transformation | DNA ligation and bacterial transformation] |
| | | | ||
|-- | |-- | ||
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| 4 | | 4 | ||
| Thur Feb 22 | | Thur Feb 22 | ||
− | | [ | + | | [http://openwetware.org/wiki/Drew_Endy | DE] |
− | | [ | + | | [http://openwetware.org/wiki/Sean_Clarke | SC] |
− | | [ | + | | [http://openwetware.org/wiki/20.109(S07):_Examine_candidate_clones | Examine candidate clones] |
| guest lecture from Harlan Breindel | | guest lecture from Harlan Breindel | ||
|-- | |-- | ||
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| 5 | | 5 | ||
| Tue Feb 27 | | Tue Feb 27 | ||
− | | [ | + | | [http://openwetware.org/wiki/Drew_Endy | DE] |
− | | [ | + | | [http://openwetware.org/wiki/Sean_Clarke | SC] |
| [[20.109(S07): Western analysis| Western analysis]] | | [[20.109(S07): Western analysis| Western analysis]] | ||
− | | | + | | [[Media:2010927022007.pdf | PDF]] of class discussion slides |
|-- | |-- | ||
| 1 | | 1 | ||
| 6 | | 6 | ||
| Thur Mar 1 | | Thur Mar 1 | ||
− | | [ | + | | [http://openwetware.org/wiki/Drew_Endy | DE] |
− | | [ | + | | [http://openwetware.org/wiki/Sean_Clarke | SC] |
− | | [ | + | | [http://openwetware.org/wiki/20.109(S07):_Probe_western | Probe western] |
− | | first draft of [[20.109(S07): Genome engineering essay| your writing assignment]] due before lab | + | | first draft of [[20.109(S07): Genome engineering essay| your writing assignment]] due before lab, [[Media:2010901032007.pdf | PDF]] of class slides |
|-- | |-- | ||
| colspan="7" | | | colspan="7" | | ||
Line 81: | Line 81: | ||
| Tue Mar 6 | | Tue Mar 6 | ||
| AJ | | AJ | ||
− | | [ | + | | [http://openwetware.org/wiki/Yoon_Sung_Nam | YSN] |
| [[20.109(S07): Start-up signal measurement| Start-up signal measurement]] | | [[20.109(S07): Start-up signal measurement| Start-up signal measurement]] | ||
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| Thur Mar 8 | | Thur Mar 8 | ||
| AJ | | AJ | ||
− | | [ | + | | [http://openwetware.org/wiki/Yoon_Sung_Nam | YSN] |
| [[20.109(S07): Measuring calcium in vitro| Measuring calcium in vitro]] | | [[20.109(S07): Measuring calcium in vitro| Measuring calcium in vitro]] | ||
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| Tue Mar 13 | | Tue Mar 13 | ||
| AJ | | AJ | ||
− | | [ | + | | [http://openwetware.org/wiki/Yoon_Sung_Nam | YSN] |
| [[20.109(S07): Lipofection| Lipofection]] | | [[20.109(S07): Lipofection| Lipofection]] | ||
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| Thur Mar 15 | | Thur Mar 15 | ||
| AJ | | AJ | ||
− | | [ | + | | [http://openwetware.org/wiki/Yoon_Sung_Nam | YSN] |
| [[20.109(S07): Measuring calcium in vivo| Measuring calcium in vivo]] | | [[20.109(S07): Measuring calcium in vivo| Measuring calcium in vivo]] | ||
| | | | ||
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| Tue Mar 20 | | Tue Mar 20 | ||
| AJ | | AJ | ||
− | | [ | + | | [http://openwetware.org/wiki/Yoon_Sung_Nam | YSN] |
| [[20.109(S07): Calcium signaling in vivo| Calcium signaling in vivo]] | | [[20.109(S07): Calcium signaling in vivo| Calcium signaling in vivo]] | ||
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| Thur Mar 22 | | Thur Mar 22 | ||
| AJ | | AJ | ||
− | | [ | + | | [http://openwetware.org/wiki/Yoon_Sung_Nam | YSN] |
| [[20.109(S07): Student presentations, module 2 | Student presentations]] | | [[20.109(S07): Student presentations, module 2 | Student presentations]] | ||
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| 1 | | 1 | ||
| Tue Apr 3 | | Tue Apr 3 | ||
− | | [ | + | | [http://openwetware.org/wiki/Natalie_Kuldell | NK] |
− | | [ | + | | [http://openwetware.org/wiki/Andrea_Tentner | AT] |
| [[20.109(S07): Start-up expression engineering| Start-up expression engineering]] | | [[20.109(S07): Start-up expression engineering| Start-up expression engineering]] | ||
− | | | + | | [[Media:Macintosh HD-Users-nkuldell-Desktop-lectures-BE109 lectures (S07)-109(S07)lect1 handout.pdf| PDF]] of M3D1 lecture slides |
|-- | |-- | ||
| 3 | | 3 | ||
| 2 | | 2 | ||
| Thur Apr 5 | | Thur Apr 5 | ||
− | | [ | + | | [http://openwetware.org/wiki/Natalie_Kuldell | NK] |
− | | [ | + | | [http://openwetware.org/wiki/Andrea_Tentner | AT] |
| [[20.109(S07): Yeast transformation| Yeast transformation]] | | [[20.109(S07): Yeast transformation| Yeast transformation]] | ||
− | | | + | | [[Media:Macintosh HD-Users-nkuldell-Desktop-lectures-BE109 lectures (S07)-109(S07)lect2 handout.pdf| PDF]] of M3D2 lecture slides |
|-- | |-- | ||
| 3 | | 3 | ||
| 3 | | 3 | ||
| Tue Apr 10 | | Tue Apr 10 | ||
− | | [ | + | | [http://openwetware.org/wiki/Natalie_Kuldell | NK] |
− | | [ | + | | [http://openwetware.org/wiki/Andrea_Tentner | AT] |
| [[20.109(S07): Colony PCR| Colony PCR]] | | [[20.109(S07): Colony PCR| Colony PCR]] | ||
− | | guest lecture: | + | | guest lecture: Susan Ruff and her slides are [[Media:Macintosh HD-Users-nkuldell-Desktop-What is I M R D Anyway.pdf| here]] |
|-- | |-- | ||
| 3 | | 3 | ||
| 4 | | 4 | ||
| Thur Apr 12 | | Thur Apr 12 | ||
− | | [ | + | | [http://openwetware.org/wiki/Natalie_Kuldell | NK] |
− | | [ | + | | [http://openwetware.org/wiki/Andrea_Tentner | AT] |
− | | [ | + | | [http://openwetware.org/wiki/20.109(S07):_Screen_for_phenotypes,_isolate_RNA | Screen for phenotypes, isolate RNA] |
− | | | + | | [[Media:Macintosh HD-Users-nkuldell-Desktop-lectures-BE109 lectures (S07)-109(S07)lect3 handout.pdf | PDF]] of M3D4 lecture slides |
|-- | |-- | ||
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| 5 | | 5 | ||
| Thur Apr 19 | | Thur Apr 19 | ||
− | | [ | + | | [http://openwetware.org/wiki/Natalie_Kuldell | NK] |
− | | [ | + | | [http://openwetware.org/wiki/Andrea_Tentner | AT] |
| [[20.109(S07): cDNA synthesis and microarray| cDNA synthesis and microarray]] | | [[20.109(S07): cDNA synthesis and microarray| cDNA synthesis and microarray]] | ||
− | | | + | | [[Media:109(S07)lect4 handout.pdf| PDF]] of M3D5 lecture slides |
|-- | |-- | ||
| 3 | | 3 | ||
| 6 | | 6 | ||
| Tue Apr 24 | | Tue Apr 24 | ||
− | | [ | + | | [http://openwetware.org/wiki/Natalie_Kuldell | NK] |
− | | [ | + | | [http://openwetware.org/wiki/Andrea_Tentner | AT] |
| [[20.109(S07): Microarray data analysis| Microarray data analysis]] | | [[20.109(S07): Microarray data analysis| Microarray data analysis]] | ||
− | | guest lecture: Rebecca Fry | + | | guest lecture: Rebecca Fry <br> and her slides are [[Media:Macintosh HD-Users-nkuldell-Desktop-dataanalysis20071.pdf| here]] |
|-- | |-- | ||
| colspan="7" | | | colspan="7" | | ||
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| Thur Apr 26 | | Thur Apr 26 | ||
| AB | | AB | ||
− | | [ | + | | [http://openwetware.org/wiki/Chandni_Valiathan | CV] |
− | | [[20.109(S07): | + | | [[20.109(S07):Bio-material engineering/Screening library | Screening library]] |
− | | | + | | |
|-- | |-- | ||
| 4 | | 4 | ||
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| Tue May 1 | | Tue May 1 | ||
| AB | | AB | ||
− | | [ | + | | [http://openwetware.org/wiki/Chandni_Valiathan | CV] |
− | | [[20.109(S07): | + | | [[20.109(S07): Bio-material engineering/Optimizing panning | Optimizing panning]] |
− | | | + | | first draft of [[20.109(S07): Expression engineering report| your writing assignment]] due Monday April 30th by 9AM |
|-- | |-- | ||
| 4 | | 4 | ||
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| Thur May 3 | | Thur May 3 | ||
| AB | | AB | ||
− | | [ | + | | [http://openwetware.org/wiki/Chandni_Valiathan | CV] |
− | | [[20.109(S07): | + | | [[20.109(S07): Bio-material engineering/Rescreening gold binders | Rescreening gold binders]] |
− | | | + | | |
|-- | |-- | ||
| 4 | | 4 | ||
Line 215: | Line 215: | ||
| Tue May 8 | | Tue May 8 | ||
| AB | | AB | ||
− | | [ | + | | [http://openwetware.org/wiki/Chandni_Valiathan | CV] |
− | | [[20.109 (S07): | + | | [[20.109(S07): Bio-material engineering/PCR of gold binding candidates | PCR of gold binding candidates]] |
− | | | + | | Mod 3 lab reports returned for revision |
|-- | |-- | ||
| 4 | | 4 | ||
Line 223: | Line 223: | ||
| Thur May 10 | | Thur May 10 | ||
| AB | | AB | ||
− | | [ | + | | [http://openwetware.org/wiki/Chandni_Valiathan | CV] |
− | | [ | + | | [http://openwetware.org/wiki/20.109_(S07):_Research_proposal,_module_4 | Student presentations] |
− | | | + | | |
|-- | |-- | ||
| 4 | | 4 | ||
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| Tue May 15 | | Tue May 15 | ||
| AB | | AB | ||
− | | [ | + | | [http://openwetware.org/wiki/Chandni_Valiathan | CV] |
− | | [[20.109 (S07): | + | | [[20.109(S07): Bio-material engineering/Sequence analysis | Analyze sequence data]] |
− | | | + | | Revised Mod 3 writing assignment due before lab<br> no lecture today |
|-- | |-- | ||
| | | | ||
| | | | ||
− | | Thur May | + | | Thur May 17 |
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| | | |
Latest revision as of 15:31, 15 June 2015
MODULE | DAY | DATE | LECTURER | TA | LAB | note |
Tue Feb 6 | NK] | Orientation | ||||
1 | 1 | Thur Feb 8 | DE] | SC] | Start-up genome engineering | PDF of class discussion slides |
1 | 2 | Tue Feb 13 | DE] | SC] | Agarose gel electrophoresis | PDF of class notes |
1 | 3 | Thur Feb 15 | DE] | SC] | DNA ligation and bacterial transformation] | |
President's Day Feb 19 | No lab Feb 20 or Feb 21 | |||||
---|---|---|---|---|---|---|
1 | 4 | Thur Feb 22 | DE] | SC] | Examine candidate clones] | guest lecture from Harlan Breindel |
1 | 5 | Tue Feb 27 | DE] | SC] | Western analysis | PDF of class discussion slides |
1 | 6 | Thur Mar 1 | DE] | SC] | Probe western] | first draft of your writing assignment due before lab, PDF of class slides |
2 | 1 | Tue Mar 6 | AJ | YSN] | Start-up signal measurement | |
2 | 2 | Thur Mar 8 | AJ | YSN] | Measuring calcium in vitro | |
2 | 3 | Tue Mar 13 | AJ | YSN] | Lipofection | |
2 | 4 | Thur Mar 15 | AJ | YSN] | Measuring calcium in vivo | |
2 | 5 | Tue Mar 20 | AJ | YSN] | Calcium signaling in vivo | |
2 | 6 | Thur Mar 22 | AJ | YSN] | Student presentations | |
Spring Break Mar 26-30 | No lab all week | |||||
3 | 1 | Tue Apr 3 | NK] | AT] | Start-up expression engineering | PDF of M3D1 lecture slides |
3 | 2 | Thur Apr 5 | NK] | AT] | Yeast transformation | PDF of M3D2 lecture slides |
3 | 3 | Tue Apr 10 | NK] | AT] | Colony PCR | guest lecture: Susan Ruff and her slides are here |
3 | 4 | Thur Apr 12 | NK] | AT] | Screen for phenotypes, isolate RNA] | PDF of M3D4 lecture slides |
Patriot's Day April 16-17 | No lab Apr 17 or Apr 18 | |||||
3 | 5 | Thur Apr 19 | NK] | AT] | cDNA synthesis and microarray | PDF of M3D5 lecture slides |
3 | 6 | Tue Apr 24 | NK] | AT] | Microarray data analysis | guest lecture: Rebecca Fry and her slides are here |
4 | 1 | Thur Apr 26 | AB | CV] | Screening library | |
4 | 2 | Tue May 1 | AB | CV] | Optimizing panning | first draft of your writing assignment due Monday April 30th by 9AM |
4 | 3 | Thur May 3 | AB | CV] | Rescreening gold binders | |
4 | 4 | Tue May 8 | AB | CV] | PCR of gold binding candidates | Mod 3 lab reports returned for revision |
4 | 5 | Thur May 10 | AB | CV] | Student presentations] | |
4 | 6 | Tue May 15 | AB | CV] | Analyze sequence data | Revised Mod 3 writing assignment due before lab no lecture today |
Thur May 17 | Lecture only, no lab |