Difference between revisions of "20.109: Spring 2007 schedule"

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|'''TA'''
 
|'''TA'''
 
|'''LAB'''
 
|'''LAB'''
 +
|'''note'''
 
|--
 
|--
 
|  
 
|  
 
|  
 
|  
−
| Tues Feb 6  
+
| Tue Feb 6  
−
| [[Natalie Kuldell | NK]]
+
| [http://openwetware.org/wiki/Natalie_Kuldell  | NK]
 
|  
 
|  
−
| [[BE.109:Orientation | Orientation]]
+
| [[20.109(S07):Lab tour | Orientation]]
 +
|
 
|--
 
|--
−
| colspan="6" |
+
| colspan="7" |
 
|--
 
|--
 
| 1
 
| 1
 
| 1
 
| 1
−
| Thurs Feb 8
+
| Thur Feb 8
−
|  
+
| [http://openwetware.org/wiki/Drew_Endy  | DE]
−
|  
+
| [http://openwetware.org/wiki/Sean_Clarke  | SC]
−
| [[BE.109:DNA engineering/DNA engineering by PCR | DNA engineering by PCR]]
+
| [[20.109(S07):Start-up genome engineering | Start-up genome engineering]]
 +
| [[Media:20109080207.pdf | PDF]] of class discussion slides
 
|--
 
|--
 
| 1
 
| 1
 
| 2
 
| 2
−
| Tues Feb 13  
+
| Tue Feb 13  
−
|  
+
| [http://openwetware.org/wiki/Drew_Endy  | DE]
−
|  
+
| [http://openwetware.org/wiki/Sean_Clarke  | SC]
−
| [[BE.109:DNA engineering/Clean and cut DNA | Clean and cut DNA]]
+
| [[20.109(S07): Agarose gel electrophoresis| Agarose gel electrophoresis]]
 +
| [[Media:20109M1L2.pdf | PDF]] of class notes
 
|--
 
|--
 
| 1
 
| 1
 
| 3
 
| 3
−
| Thurs Feb 15
+
| Thur Feb 15
−
|  
+
| [http://openwetware.org/wiki/Drew_Endy  | DE]
−
|  
+
| [http://openwetware.org/wiki/Sean_Clarke  | SC]
−
| [[BE.109:DNA engineering/Agarose gel electrophoresis | Agarose gel electrophoresis]]
+
| [http://openwetware.org/wiki/20.109(S07):_DNA_ligation_and_bacterial_transformation | DNA ligation and bacterial transformation]
 +
|
 
|--
 
|--
 
|
 
|
 
|
 
|
−
! colspan="3" | President's Day Feb 19
+
! colspan="4" | President's Day Feb 19
−
| '''No lab Feb 20 (Mon schedule) or Feb 21'''
+
| '''No lab Feb 20 or Feb 21'''
 
|--
 
|--
 
| 1
 
| 1
 
| 4
 
| 4
−
| Thurs Feb 22
+
| Thur Feb 22
−
|  
+
| [http://openwetware.org/wiki/Drew_Endy  | DE]
−
|  
+
| [http://openwetware.org/wiki/Sean_Clarke  | SC]
−
| [[BE.109:DNA engineering/DNA ligation and bacterial transformation | DNA ligation and bacterial transformation]]
+
| [http://openwetware.org/wiki/20.109(S07):_Examine_candidate_clones | Examine candidate clones]
 +
| guest lecture from Harlan Breindel
 
|--
 
|--
 
| 1
 
| 1
 
| 5
 
| 5
−
| Tues Feb 27
+
| Tue Feb 27
−
|  
+
| [http://openwetware.org/wiki/Drew_Endy  | DE]
−
|  
+
| [http://openwetware.org/wiki/Sean_Clarke  | SC]
−
| [[BE.109:DNA engineering/Examine candidate clones | Examine candidate clones]]
+
| [[20.109(S07): Western analysis| Western analysis]]
 +
| [[Media:2010927022007.pdf | PDF]] of class discussion slides
 
|--
 
|--
−
| 2
 
 
| 1
 
| 1
−
| Thurs Mar 1
+
| 6
−
|  
+
| Thur Mar 1
−
|  
+
| [http://openwetware.org/wiki/Drew_Endy  | DE]
−
| [[BE.109:DNA engineering/Restriction map and tissue culture | Restriction map+ Article Discussion/Tissue Culture]]
+
| [http://openwetware.org/wiki/Sean_Clarke  | SC]
 +
| [http://openwetware.org/wiki/20.109(S07):_Probe_western | Probe western]
 +
| first draft of [[20.109(S07): Genome engineering essay| your writing assignment]] due before lab, [[Media:2010901032007.pdf | PDF]] of class slides
 
|--
 
|--
−
| 2
+
| colspan="7" |
−
| 2
+
−
| Tues Mar
+
−
|
+
−
|
+
−
| [[BE.109:DNA engineering/Lipofection | Lipofection]]
+
−
|--
+
−
| 1
+
−
| 8
+
−
| Thurs Mar
+
−
|
+
−
|
+
−
| [[BE.109:DNA engineering/FACS analysis | FACS analysis]]
+
−
|--
+
−
| colspan="6" |
+
 
|--
 
|--
 
| 2
 
| 2
 
| 1
 
| 1
−
| Tues Mar  
+
| Tue Mar 6
−
|  
+
| AJ
−
|  
+
| [http://openwetware.org/wiki/Yoon_Sung_Nam  | YSN]
−
| [[BE.109:Protein engineering/Tools for protein engineering | Tools for protein engineering]]
+
| [[20.109(S07): Start-up signal measurement| Start-up signal measurement]]
 +
|
 
|--
 
|--
 
| 2
 
| 2
 
| 2
 
| 2
−
| Thurs Mar  
+
| Thur Mar 8
−
|  
+
| AJ
−
|  
+
| [http://openwetware.org/wiki/Yoon_Sung_Nam  | YSN]
−
| [[BE.109:Protein engineering/Assessing beta-galactosidase | Assessing beta-galactosidase]]
+
| [[20.109(S07): Measuring calcium in vitro| Measuring calcium in vitro]]
 +
|
 
|--
 
|--
 
| 2
 
| 2
 
| 3
 
| 3
−
| Tues Mar  
+
| Tue Mar 13
−
|  
+
| AJ
−
|  
+
| [http://openwetware.org/wiki/Yoon_Sung_Nam  | YSN]
−
| [[BE.109:Protein engineering/Purifying beta-galactosidase | Purifying beta-galactosidase]]
+
| [[20.109(S07): Lipofection| Lipofection]]
 +
|
 
|--
 
|--
 
| 2
 
| 2
 
| 4
 
| 4
−
| Thurs Mar  
+
| Thur Mar 15
 +
| AJ
 +
| [http://openwetware.org/wiki/Yoon_Sung_Nam  | YSN]
 +
| [[20.109(S07): Measuring calcium in vivo| Measuring calcium in vivo]]
 
|
 
|
−
|
 
−
| [[BE.109:Protein engineering/Possible topics for student presentations | Student presentations]]
 
 
|--
 
|--
 +
| 2
 +
| 5
 +
| Tue Mar 20
 +
| AJ
 +
| [http://openwetware.org/wiki/Yoon_Sung_Nam  | YSN]
 +
| [[20.109(S07): Calcium signaling in vivo| Calcium signaling in vivo]]
 
|
 
|
 +
|--
 +
| 2
 +
| 6
 +
| Thur Mar 22
 +
| AJ
 +
| [http://openwetware.org/wiki/Yoon_Sung_Nam  | YSN]
 +
| [[20.109(S07): Student presentations, module 2 | Student presentations]]
 
|
 
|
−
! colspan="3" | Spring Break Mar 27-31
 
−
| '''No lab Mar 27-31'''
 
 
|--
 
|--
−
| colspan="6" |
+
|
 +
|
 +
! colspan="4" | Spring Break Mar 26-30
 +
| '''No lab all week'''
 
|--
 
|--
−
| [[BE.109:Systems engineering | 3]]
+
| colspan="7" |
 +
|--
 +
| 3
 
| 1
 
| 1
−
| Tues Apr
+
| Tue Apr 3
−
|  
+
| [http://openwetware.org/wiki/Natalie_Kuldell  | NK]
−
|
+
| [http://openwetware.org/wiki/Andrea_Tentner  | AT]
−
| [[BE.109:Systems engineering/Tools for systems engineering | Tools for systems engineering]]
+
| [[20.109(S07): Start-up expression engineering| Start-up expression engineering]]
 +
| [[Media:Macintosh HD-Users-nkuldell-Desktop-lectures-BE109 lectures (S07)-109(S07)lect1 handout.pdf| PDF]] of M3D1 lecture slides 
 
|--
 
|--
−
| [[BE.109:Systems engineering | 3]]
+
| 3
 
| 2
 
| 2
−
| Thurs Apr  
+
| Thur Apr 5
−
|  
+
| [http://openwetware.org/wiki/Natalie_Kuldell  | NK]
−
|  
+
| [http://openwetware.org/wiki/Andrea_Tentner  | AT]
−
| [[BE.109:Systems engineering/Basic bacterial photography: black and white | Basic bacterial photography: black and white]]
+
| [[20.109(S07): Yeast transformation| Yeast transformation]]
 +
| [[Media:Macintosh HD-Users-nkuldell-Desktop-lectures-BE109 lectures (S07)-109(S07)lect2 handout.pdf| PDF]] of M3D2 lecture slides
 
|--
 
|--
−
| [[BE.109:Systems engineering | 3]]
 
 
| 3
 
| 3
−
| Tues Apr  
+
| 3
−
|  
+
| Tue Apr 10
−
|  
+
| [http://openwetware.org/wiki/Natalie_Kuldell  | NK]
−
| [[BE.109:Systems engineering/Advanced bacterial photography: 2 color | Advanced bacterial photography: 2 color]]
+
| [http://openwetware.org/wiki/Andrea_Tentner  | AT]
 +
| [[20.109(S07): Colony PCR| Colony PCR]]
 +
| guest lecture: Susan Ruff and her slides are [[Media:Macintosh HD-Users-nkuldell-Desktop-What is I M R D Anyway.pdf| here]]
 
|--
 
|--
−
| [[BE.109:Systems engineering | 3]]
+
| 3
 
| 4
 
| 4
−
| Thurs Apr  
+
| Thur Apr 12
−
|  
+
| [http://openwetware.org/wiki/Natalie_Kuldell  | NK]
−
|  
+
| [http://openwetware.org/wiki/Andrea_Tentner  | AT]
−
| [[BE.109:Systems engineering/Device characterization | Device characterization]]
+
| [http://openwetware.org/wiki/20.109(S07):_Screen_for_phenotypes,_isolate_RNA | Screen for phenotypes, isolate RNA]
 +
| [[Media:Macintosh HD-Users-nkuldell-Desktop-lectures-BE109 lectures (S07)-109(S07)lect3 handout.pdf | PDF]] of M3D4 lecture slides
 
|--
 
|--
 
|
 
|
 
|
 
|
−
! colspan="3" | Patriot's Day April 17-18
+
! colspan="4" | Patriot's Day April 16-17
−
| '''No lab Apr 18 or Apr 19'''
+
| '''No lab Apr 17 or Apr 18'''
 
|--
 
|--
−
| [[BE.109:Systems engineering | 3]]
+
| 3
 
| 5
 
| 5
−
| Thurs Apr  
+
| Thur Apr 19
−
|  
+
| [http://openwetware.org/wiki/Natalie_Kuldell  | NK]
−
|  
+
| [http://openwetware.org/wiki/Andrea_Tentner  | AT]
−
| [[BE.109:Systems engineering/Measuring DNA, RNA, protein | Measuring DNA, RNA, protein]]
+
| [[20.109(S07): cDNA synthesis and microarray| cDNA synthesis and microarray]]
 +
| [[Media:109(S07)lect4 handout.pdf| PDF]] of M3D5 lecture slides
 
|--
 
|--
−
| [[BE.109:Systems engineering | 3]]
+
| 3
 
| 6
 
| 6
−
| Tues Apr  
+
| Tue Apr 24
−
|  
+
| [http://openwetware.org/wiki/Natalie_Kuldell  | NK]
−
|  
+
| [http://openwetware.org/wiki/Andrea_Tentner  | AT]
−
| [[BE.109:Systems engineering/RT-PCR data analysis | RT-PCR data analysis]]
+
| [[20.109(S07): Microarray data analysis| Microarray data analysis]]
 +
| guest lecture: Rebecca Fry <br> and her slides are [[Media:Macintosh HD-Users-nkuldell-Desktop-dataanalysis20071.pdf| here]]
 
|--
 
|--
−
| colspan="6" |
+
| colspan="7" |
 
|--
 
|--
 
| 4
 
| 4
 
| 1
 
| 1
−
| Thurs Apr  
+
| Thur Apr 26
 +
| AB
 +
| [http://openwetware.org/wiki/Chandni_Valiathan  | CV]
 +
| [[20.109(S07):Bio-material engineering/Screening library | Screening library]]
 
|  
 
|  
−
|
 
−
| [[BE.109:Bio-material engineering/Screening library | Screening library]]
 
 
|--
 
|--
 
| 4
 
| 4
 
| 2
 
| 2
−
| Tues May  
+
| Tue May 1
−
|  
+
| AB
−
|  
+
| [http://openwetware.org/wiki/Chandni_Valiathan  | CV]
−
| [[BE.109:Bio-material engineering/Optimizing panning | Optimizing panning]]
+
| [[20.109(S07): Bio-material engineering/Optimizing panning | Optimizing panning]]
 +
| first draft of [[20.109(S07): Expression engineering report| your writing assignment]] due Monday April 30th by 9AM
 
|--
 
|--
 
| 4
 
| 4
 
| 3
 
| 3
−
| Thurs May  
+
| Thur May 3
 +
| AB
 +
| [http://openwetware.org/wiki/Chandni_Valiathan  | CV]
 +
| [[20.109(S07): Bio-material engineering/Rescreening gold binders | Rescreening gold binders]]
 
|  
 
|  
−
|
 
−
| [[BE.109:Bio-material engineering/Rescreening gold binders | Rescreening gold binders]]
 
 
|--
 
|--
 
| 4
 
| 4
 
| 4
 
| 4
−
| Tues May  
+
| Tue May 8
−
|  
+
| AB
−
|  
+
| [http://openwetware.org/wiki/Chandni_Valiathan  | CV]
−
| [[BE.109:Bio-material engineering/PCR of gold binding candidates | PCR of gold binding candidates]]
+
| [[20.109(S07): Bio-material engineering/PCR of gold binding candidates | PCR of gold binding candidates]]
 +
| Mod 3 lab reports returned for revision
 
|--
 
|--
 
| 4
 
| 4
 
| 5
 
| 5
−
| Thurs May  
+
| Thur May 10
 +
| AB
 +
| [http://openwetware.org/wiki/Chandni_Valiathan  | CV]
 +
| [http://openwetware.org/wiki/20.109_(S07):_Research_proposal,_module_4 | Student presentations]
 
|  
 
|  
−
|
 
−
| [[BE.109:Presenting your work | Student presentations]]
 
 
|--
 
|--
 
| 4
 
| 4
 
| 6
 
| 6
−
| Tues May  
+
| Tue May 15
−
|  
+
| AB
−
|  
+
| [http://openwetware.org/wiki/Chandni_Valiathan  | CV]
−
| [[BE.109:Bio-material engineering/Sequence analysis | Analyze sequence data]]
+
| [[20.109(S07): Bio-material engineering/Sequence analysis | Analyze sequence data]]
 +
| Revised Mod 3 writing assignment due before lab<br> no lecture today
 
|--
 
|--
 
|
 
|
 
|
 
|
−
| Thurs May 18
+
| Thur May 17
 
|
 
|
 
|
 
|
 
| Lecture only, no lab
 
| Lecture only, no lab
 +
|
 
|}
 
|}
−
 
 
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Latest revision as of 15:31, 15 June 2015


20.109: Laboratory Fundamentals of Biological Engineering

Macintosh HD-Users-nkuldell-Desktop-20.109template.png

Home        People        Schedule Spring 2007        Lab Basics        OWW Basics       
Genome Engineering        Biophysical Signal Measurement        Expression Engineering        Biomaterial Engineering       

MODULE DAY DATE LECTURER TA LAB note
Tue Feb 6 NK] Orientation
1 1 Thur Feb 8 DE] SC] Start-up genome engineering PDF of class discussion slides
1 2 Tue Feb 13 DE] SC] Agarose gel electrophoresis PDF of class notes
1 3 Thur Feb 15 DE] SC] DNA ligation and bacterial transformation]
President's Day Feb 19 No lab Feb 20 or Feb 21
1 4 Thur Feb 22 DE] SC] Examine candidate clones] guest lecture from Harlan Breindel
1 5 Tue Feb 27 DE] SC] Western analysis PDF of class discussion slides
1 6 Thur Mar 1 DE] SC] Probe western] first draft of your writing assignment due before lab, PDF of class slides
2 1 Tue Mar 6 AJ YSN] Start-up signal measurement
2 2 Thur Mar 8 AJ YSN] Measuring calcium in vitro
2 3 Tue Mar 13 AJ YSN] Lipofection
2 4 Thur Mar 15 AJ YSN] Measuring calcium in vivo
2 5 Tue Mar 20 AJ YSN] Calcium signaling in vivo
2 6 Thur Mar 22 AJ YSN] Student presentations
Spring Break Mar 26-30 No lab all week
3 1 Tue Apr 3 NK] AT] Start-up expression engineering PDF of M3D1 lecture slides
3 2 Thur Apr 5 NK] AT] Yeast transformation PDF of M3D2 lecture slides
3 3 Tue Apr 10 NK] AT] Colony PCR guest lecture: Susan Ruff and her slides are here
3 4 Thur Apr 12 NK] AT] Screen for phenotypes, isolate RNA] PDF of M3D4 lecture slides
Patriot's Day April 16-17 No lab Apr 17 or Apr 18
3 5 Thur Apr 19 NK] AT] cDNA synthesis and microarray PDF of M3D5 lecture slides
3 6 Tue Apr 24 NK] AT] Microarray data analysis guest lecture: Rebecca Fry
and her slides are here
4 1 Thur Apr 26 AB CV] Screening library
4 2 Tue May 1 AB CV] Optimizing panning first draft of your writing assignment due Monday April 30th by 9AM
4 3 Thur May 3 AB CV] Rescreening gold binders
4 4 Tue May 8 AB CV] PCR of gold binding candidates Mod 3 lab reports returned for revision
4 5 Thur May 10 AB CV] Student presentations]
4 6 Tue May 15 AB CV] Analyze sequence data Revised Mod 3 writing assignment due before lab
no lecture today
Thur May 17 Lecture only, no lab
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