Difference between revisions of "20.109(F07): Fall 2007 schedule"

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(New page: {{Template:20.109(F07)}} <div style="padding: 10px; width: 640px; border: 5px solid #666699;"> {| border=1px |'''MODULE''' |'''DAY''' |'''DATE''' |'''LECTURER''' |'''TA''' |'''LAB''' |''...)
 
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| Thurs Sept 6  
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| Thur Sept 6  
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| [[Natalie Kuldell | NK]]
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| [http://openwetware.org/wiki/Natalie_Kuldell  | NK]
−
|  
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| [http://openwetware.org/wiki/User:AliceLo | AL]
 
| [[20.109(F07):Lab tour | Orientation]]
 
| [[20.109(F07):Lab tour | Orientation]]
−
|
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| notes from the first lecture are [[Media:Orientation(F07) hndout.pdf| here]]
 
|--
 
|--
 
| colspan="7" |
 
| colspan="7" |
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| 1
 
| 1
 
| 1
 
| 1
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| Tues Sept 11
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| Tue Sept 11
−
|  
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| [http://openwetware.org/wiki/Drew_Endy  | DE]
−
|  
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| [http://openwetware.org/wiki/Laure-Anne_Ventouras | LAV]
−
|  
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| [http://openwetware.org/wiki/20.109(F07):Start-up_genome_engineering  | Start-up genome engineering]
−
|  
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| PDF copy of notes from discussion are [[Media:20109F7M1L1.pdf| here]]
 
|--
 
|--
 
| 1
 
| 1
 
| 2
 
| 2
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| Thurs Sept 13  
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| Thur Sept 13  
−
|  
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| [http://openwetware.org/wiki/Drew_Endy  | DE]
−
|  
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| [http://openwetware.org/wiki/Laure-Anne_Ventouras | LAV]
−
|  
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| [http://openwetware.org/wiki/20.109(F07):_Agarose_gel_electrophoresis  | Agarose gel electrophoresis]
−
|  
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| PDF copy of notes from discussion are [[Media:20109F7M1L2.pdf| here]]
 
|--
 
|--
 
| 1
 
| 1
 
| 3
 
| 3
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| Tues Sept 18
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| Tue Sept 18
−
|  
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| [http://openwetware.org/wiki/Drew_Endy  | DE]
−
|  
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| [http://openwetware.org/wiki/Laure-Anne_Ventouras | LAV]
−
|  
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| [[20.109(F07): DNA ligation and bacterial transformation| DNA ligation and bacterial transformation]]
−
|
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| PDF copy of notes from discussion are [[Media:20109F7M1L3.pdf| here]]
 
|--
 
|--
 
| 1
 
| 1
 
| 4
 
| 4
−
| Thurs Sept 20
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| Thur Sept 20
−
|  
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| [http://openwetware.org/wiki/Drew_Endy  | DE]
−
|  
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| [http://openwetware.org/wiki/Laure-Anne_Ventouras | LAV]
−
|  
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| [http://openwetware.org/wiki/20.109(F07):_Examine_candidate_clones | Examine candidate clones]
−
|
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| PDF copy of slides from discussion are [[Media:20109F07M1L4st.pdf| here]]
 
|--
 
|--
 
| 1
 
| 1
 
| 5
 
| 5
−
| Tues Sept 25
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| Tue Sept 25
−
|  
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| [http://openwetware.org/wiki/Drew_Endy  | DE]
−
|  
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| [http://openwetware.org/wiki/Laure-Anne_Ventouras | LAV]
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|  
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| [[20.109(F07): M13.1| M13.1]]
−
|  
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| PDF copy of slides from discussion are [[Media:20109F07M1L5.pdf| here]] (In lab we will hear from [http://openwetware.org/wiki/User:Atissa | the oral presenation] instructor)
 
|--
 
|--
 
| 1
 
| 1
 
| 6
 
| 6
−
| Thurs Sept 27
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| Thur Sept 27
−
|  
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| [http://openwetware.org/wiki/Drew_Endy  | DE]
−
|  
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| [http://openwetware.org/wiki/Laure-Anne_Ventouras | LAV]
−
|  
+
| [[20.109(F07): Western analysis| Western analysis]]
−
|  
+
| PDF copy of slides from discussion are [[Media:20109F07M1L6.pdf | here]]
 
|--
 
|--
 
| 1
 
| 1
 
| 7
 
| 7
 
| Tue Oct 2
 
| Tue Oct 2
−
|  
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| [http://openwetware.org/wiki/Drew_Endy  | DE]
−
|  
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| [http://openwetware.org/wiki/Laure-Anne_Ventouras | LAV]
−
|  
+
| [http://openwetware.org/wiki/20.109(F07):_Probe_western | Probe western]
−
|
+
| the first draft of your [[20.109(F07): Genome engineering assessment| genome engineering portfolio]] <b> Parts 1, 2, and 4 only </b> is due before you arrive in lab. During lab there will be a lecture from the [http://web.mit.edu/environment/ehs/about_ehs.html| EHS representative].  PDF copy of slides from discussion are [[Media:20109100207.pdf | here]].
 
|--
 
|--
 
| 1
 
| 1
 
| 8
 
| 8
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| Thurs Oct 4
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| Thur Oct 4
−
|  
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| [http://openwetware.org/wiki/Drew_Endy  | DE]
−
|  
+
| [http://openwetware.org/wiki/Laure-Anne_Ventouras | LAV]
−
|  
+
| [[20.109(F07): Module 1 oral presentations| Oral Presentations]]
 +
| the first draft of your [[20.109(F07): Genome engineering assessment| genome engineering portfolio]] <b> Part 3 only </b> is due before you arrive in lab. 
 +
|--
 +
| colspan="7" |
 +
|--
 +
|
 
|
 
|
 +
! colspan="4" | Columbus Day Break Oct 8,9
 +
| '''No lab Tuesday and Wednesday'''
 
|--
 
|--
 
| colspan="7" |
 
| colspan="7" |
 +
|--
 +
| 2
 +
| 1
 +
| Thur Oct 11
 +
| [http://openwetware.org/wiki/Natalie_Kuldell  | NK]
 +
| [http://openwetware.org/wiki/User:AliceLo | AL]
 +
| [[20.109(F07): siRNA design| siRNA design and start-up in cell culture]]
 +
| PDF copy of lecture slides are [[Media:109(F07)M2D1 handout.pdf| here]]
 +
|--
 +
| 2
 +
| 2
 +
| Tue Oct 16
 +
| [http://openwetware.org/wiki/Natalie_Kuldell  | NK]
 +
| [http://openwetware.org/wiki/User:AliceLo | AL]
 +
| [[20.109(F07): Transfection| Transfection]]
 +
| PDF copy of lecture slides are [[Media:109(F07) M2D2handout.pdf| here]]
 
|--
 
|--
 
| 2
 
| 2
 
| 3
 
| 3
−
| Tue Mar 13
+
| Thur Oct 18
−
| AJ
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| [http://openwetware.org/wiki/Natalie_Kuldell  | NK]
−
| [[Yoon Sung Nam | YSN]]
+
| [http://openwetware.org/wiki/User:AliceLo | AL]
−
| [[20.109(S07): Lipofection| Lipofection]]
+
| [[20.109(F07): Luciferase assays and RNA prep| Luciferase assays and RNA prep]]
−
|
+
| PDF copy of lecture slides are [[Media:109(F07) M2D3handout.pdf| here]]
 
|--
 
|--
 
| 2
 
| 2
 
| 4
 
| 4
−
| Thur Mar 15
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| Tues Oct 23
−
| AJ
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| [http://openwetware.org/wiki/Natalie_Kuldell  | NK]
−
| [[Yoon Sung Nam | YSN]]
+
| [http://openwetware.org/wiki/User:AliceLo | AL]
−
| [[20.109(S07): Measuring calcium in vivo| Measuring calcium in vivo]]
+
| [[20.109(F07): Journal article discussion| Journal article discussion]]
−
|
+
| Guest lecture: [http://openwetware.org/wiki/User:Nlerner | NL] from the writing program. <br> PDF of his slides are on his user page as well as [[Media:20.109_F07.pdf|here (overview)]] and
−
|--
+
[[Media:Guide_to_Scientific_Writing.pdf|here (Guide to Scientific Writing)]]
 +
|-
 
| 2
 
| 2
 
| 5
 
| 5
−
| Tue Mar 20
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| Thur Oct 25
−
| AJ
+
| [http://openwetware.org/wiki/Natalie_Kuldell  | NK]
−
| [[Yoon Sung Nam | YSN]]
+
| [http://openwetware.org/wiki/User:AliceLo | AL]
−
| [[20.109(S07): Calcium signaling in vivo| Calcium signaling in vivo]]
+
| [[20.109(F07): cDNA synthesis and microarray| cDNA synthesis and microarray]]
−
|
+
| PDF copy of lecture slides are [[Media:109(F07) M2D5handout.pdf| here]]
 
|--
 
|--
 
| 2
 
| 2
 
| 6
 
| 6
−
| Thur Mar 22
+
| Tue Oct 30
−
| AJ
+
| [http://openwetware.org/wiki/Natalie_Kuldell  | NK]
−
| [[Yoon Sung Nam | YSN]]
+
| [http://openwetware.org/wiki/User:AliceLo | AL]
−
| [[20.109(S07): Student presentations, module 2 | Student presentations]]
+
| [[20.109(F07): Microarray data analysis| Microarray data analysis]]
−
|
+
| guest lecture by [http://csbi.mit.edu/website/members/Members/RebeccaFry Rebecca Fry]<br>PDF of her lecture slides are [[Media:Dataanalysis2007 oct.pdf| here]]
 
|--
 
|--
−
|
+
| 2
−
|
+
| 7
−
! colspan="4" | Spring Break Mar 26-30
+
| Thur Nov 1
−
| '''No lab all week'''
+
| [http://openwetware.org/wiki/Natalie_Kuldell  | NK]
 +
| [http://openwetware.org/wiki/User:AliceLo | AL]
 +
| Lecture on high throughput technologies;[[20.109(F07): Mod 2 Day 7| '''no lab''']]
 +
| First draft of your [[20.109(F07): Expression engineering report| expression engineering report]] is due by 5PM on the day you meet for lab.<br> PDF copy of lecture slides are [[Media:109(F07) M2D7handout.pdf| here]]
 +
|--
 +
| 2
 +
| 8
 +
| Tue Nov 6
 +
| [http://openwetware.org/wiki/Natalie_Kuldell  | NK]
 +
| [http://openwetware.org/wiki/User:AliceLo | AL]
 +
| [[20.109(F07): Module 2 oral presentations| Oral presentations]]
 +
| No lecture 11.06<br>Presentations will be in 56-302 for November 6th, <br>56-402 for November 7th
 
|--
 
|--
 
| colspan="7" |
 
| colspan="7" |
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| 3
 
| 3
 
| 1
 
| 1
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| Tue Apr 3
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| Thur Nov 8
−
| [[Natalie Kuldell | NK]]
+
| [http://openwetware.org/wiki/User:Abelcher | AB]
−
| [[Andrea Tentner | AT]]
+
| [http://openwetware.org/wiki/User:Barbero | RB]  
−
| [[20.109(S07): Start-up expression engineering| Start-up expression engineering]]
+
| [[20.109(F07): Growth of phage materials| Growth of phage materials]]
−
| [[Media:Macintosh HD-Users-nkuldell-Desktop-lectures-BE109 lectures (S07)-109(S07)lect1 handout.pdf| PDF]] of M3D1 lecture slides 
+
|  
 
|--
 
|--
 
| 3
 
| 3
 
| 2
 
| 2
−
| Thur Apr 5
+
| Tue Nov 13
−
| [[Natalie Kuldell | NK]]
+
| [http://openwetware.org/wiki/User:Abelcher | AB]
−
| [[Andrea Tentner | AT]]
+
| [http://openwetware.org/wiki/User:Barbero | RB]
−
| [[20.109(S07): Yeast transformation| Yeast transformation]]
+
| [http://openwetware.org/wiki/20.109(F07):_Phage_nanowires | Phage nanowires]
−
| [[Media:Macintosh HD-Users-nkuldell-Desktop-lectures-BE109 lectures (S07)-109(S07)lect2 handout.pdf| PDF]] of M3D2 lecture slides
+
| PDF copy of Atissa Bunuazizi's lecture is [[Media:Mod3 teampresentations.pdf| here]]
 
|--
 
|--
 
| 3
 
| 3
 
| 3
 
| 3
−
| Tue Apr 10
+
| Thur Nov 15
−
| [[Natalie Kuldell | NK]]
+
| [http://openwetware.org/wiki/User:Abelcher | AB]
−
| [[Andrea Tentner | AT]]
+
| [http://openwetware.org/wiki/User:Barbero | RB]
−
| [[20.109(S07): Colony PCR| Colony PCR]]
+
| [[20.109(F07): Transmission electron microscopy| TEM]]
−
| guest lecture: Susan Ruff and her slides are [[Media:Macintosh HD-Users-nkuldell-Desktop-What is I M R D Anyway.pdf| here]]
+
| PDF copy of Yoon Sung Nam's lecture is [[Media:2007-11-15 20.109 lecture.pdf| here]]
 +
|--
 +
| colspan="7" |
 
|--
 
|--
−
| 3
 
−
| 4
 
−
| Thur Apr 12
 
−
| [[Natalie Kuldell | NK]]
 
−
| [[Andrea Tentner | AT]]
 
−
| [[20.109(S07): Screen for phenotypes, isolate RNA| Screen for phenotypes, isolate RNA]]
 
−
| [[Media:Macintosh HD-Users-nkuldell-Desktop-lectures-BE109 lectures (S07)-109(S07)lect3 handout.pdf | PDF]] of M3D4 lecture slides
 
 
|--
 
|--
 
|
 
|
 
|
 
|
−
! colspan="4" | Patriot's Day April 16-17
+
! colspan="4" | Thanksgiving Break Nov 22-33
−
| '''No lab Apr 17 or Apr 18'''
+
| '''No lab or lecture all week'''
 +
|--
 +
| colspan="7" |
 
|--
 
|--
−
| 3
 
−
| 5
 
−
| Thur Apr 19
 
−
| [[Natalie Kuldell | NK]]
 
−
| [[Andrea Tentner | AT]]
 
−
| [[20.109(S07): cDNA synthesis and microarray| cDNA synthesis and microarray]]
 
−
| [[Media:109(S07)lect4 handout.pdf| PDF]] of M3D5 lecture slides
 
 
|--
 
|--
 
| 3
 
| 3
−
| 6
 
−
| Tue Apr 24
 
−
| [[Natalie Kuldell | NK]]
 
−
| [[Andrea Tentner | AT]]
 
−
| [[20.109(S07): Microarray data analysis| Microarray data analysis]]
 
−
| guest lecture: Rebecca Fry <br> and her slides are [[Media:Macintosh HD-Users-nkuldell-Desktop-dataanalysis20071.pdf| here]]
 
−
|--
 
−
| colspan="7" |
 
−
|--
 
 
| 4
 
| 4
−
| 1
+
| Tue Nov 27
−
| Thur Apr 26
+
| [http://openwetware.org/wiki/User:Abelcher | AB]
−
| AB
+
| [http://openwetware.org/wiki/User:Barbero | RB]
−
| [[Chandni Valiathan | CV]]
+
| [[20.109 (F07): Phage by design| Phage by design]]
−
| [[20.109(S07):Bio-material engineering/Screening library | Screening library]]
+
 
|  
 
|  
 
|--
 
|--
−
| 4
 
−
| 2
 
−
| Tue May 1
 
−
| AB
 
−
| [[Chandni Valiathan | CV]]
 
−
| [[20.109(S07): Bio-material engineering/Optimizing panning | Optimizing panning]]
 
−
| first draft of [[20.109(S07): Expression engineering report| your writing assignment]] due Monday April 30th by 9AM
 
−
|--
 
−
| 4
 
 
| 3
 
| 3
−
| Thur May 3
 
−
| AB
 
−
| [[Chandni Valiathan | CV]]
 
−
| [[20.109(S07): Bio-material engineering/Rescreening gold binders | Rescreening gold binders]]
 
−
|
 
−
|--
 
−
| 4
 
−
| 4
 
−
| Tue May 8
 
−
| AB
 
−
| [[Chandni Valiathan | CV]]
 
−
| [[20.109(S07): Bio-material engineering/PCR of gold binding candidates | PCR of gold binding candidates]]
 
−
| Mod 3 lab reports returned for revision
 
−
|--
 
−
| 4
 
 
| 5
 
| 5
−
| Thur May 10
+
| Thur Nov 29
−
| AB
+
| [http://openwetware.org/wiki/User:Abelcher | AB]
−
| [[Chandni Valiathan | CV]]
+
| [http://openwetware.org/wiki/User:Barbero | RB]
−
| [[20.109 (S07): Research proposal, module 4| Student presentations]]
+
| [[20.109(F07): Phage by design, pt2| Phage by design, pt 2]]
 
|  
 
|  
 
|--
 
|--
−
| 4
+
| 3
 
| 6
 
| 6
−
| Tue May 15
+
| Tue Dec 4
−
| AB
+
| [http://openwetware.org/wiki/User:Abelcher | AB]
−
| [[Chandni Valiathan | CV]]
+
| [http://openwetware.org/wiki/User:Barbero | RB]
−
| [[20.109(S07): Bio-material engineering/Sequence analysis | Analyze sequence data]]
+
| [[20.109(F07): ECD assembly| ECD assembly]]
−
| Revised Mod 3 writing assignment due before lab<br> no lecture today
+
|  
 
|--
 
|--
−
|
+
| 3
−
|
+
| 7
−
| Thur May 17
+
| Thur Dec 6
−
|
+
| [http://openwetware.org/wiki/User:Abelcher | AB]
−
|
+
| [http://openwetware.org/wiki/User:Barbero | RB]
−
| Lecture only, no lab
+
| [[20.109(F07): Module 3 oral presentations| Oral presentations]]
−
|
+
| 56-302 on Thurs, December 6th <br> 56-402 on Friday, December 7th
 +
|--
 +
| 3
 +
| 8
 +
| Tue Dec 11
 +
| [http://openwetware.org/wiki/User:Abelcher | AB]
 +
| [http://openwetware.org/wiki/User:Barbero | RB]
 +
| end of term celebration...
 +
| Lecture, no lab, for class evaluations then lunch from noon-1:30 PM, 32-G449
 
|}
 
|}
 
</div>
 
</div>

Latest revision as of 15:54, 15 June 2015


20.109(F07): Laboratory Fundamentals of Biological Engineering

Macintosh HD-Users-nkuldell-Desktop-bldg10crop.png

Home        People        Schedule Fall 2007        Assignments        Lab Basics        OWW Basics       
Genome Engineering        Expression Engineering        Biomaterials Engineering              

MODULE DAY DATE LECTURER TA LAB note
Thur Sept 6 NK] AL] Orientation notes from the first lecture are here
1 1 Tue Sept 11 DE] LAV] Start-up genome engineering] PDF copy of notes from discussion are here
1 2 Thur Sept 13 DE] LAV] Agarose gel electrophoresis] PDF copy of notes from discussion are here
1 3 Tue Sept 18 DE] LAV] DNA ligation and bacterial transformation PDF copy of notes from discussion are here
1 4 Thur Sept 20 DE] LAV] Examine candidate clones] PDF copy of slides from discussion are here
1 5 Tue Sept 25 DE] LAV] M13.1 PDF copy of slides from discussion are here (In lab we will hear from | the oral presenation instructor)
1 6 Thur Sept 27 DE] LAV] Western analysis PDF copy of slides from discussion are here
1 7 Tue Oct 2 DE] LAV] Probe western] the first draft of your genome engineering portfolio Parts 1, 2, and 4 only is due before you arrive in lab. During lab there will be a lecture from the EHS representative. PDF copy of slides from discussion are here.
1 8 Thur Oct 4 DE] LAV] Oral Presentations the first draft of your genome engineering portfolio Part 3 only is due before you arrive in lab.
Columbus Day Break Oct 8,9 No lab Tuesday and Wednesday
2 1 Thur Oct 11 NK] AL] siRNA design and start-up in cell culture PDF copy of lecture slides are here
2 2 Tue Oct 16 NK] AL] Transfection PDF copy of lecture slides are here
2 3 Thur Oct 18 NK] AL] Luciferase assays and RNA prep PDF copy of lecture slides are here
2 4 Tues Oct 23 NK] AL] Journal article discussion NL] from the writing program.
PDF of his slides are on his user page as well as here (overview) and

here (Guide to Scientific Writing)

2 5 Thur Oct 25 NK] AL] cDNA synthesis and microarray PDF copy of lecture slides are here
2 6 Tue Oct 30 NK] AL] Microarray data analysis guest lecture by Rebecca Fry
PDF of her lecture slides are here
2 7 Thur Nov 1 NK] AL] Lecture on high throughput technologies; no lab First draft of your expression engineering report is due by 5PM on the day you meet for lab.
PDF copy of lecture slides are here
2 8 Tue Nov 6 NK] AL] Oral presentations No lecture 11.06
Presentations will be in 56-302 for November 6th,
56-402 for November 7th
3 1 Thur Nov 8 AB] RB] Growth of phage materials
3 2 Tue Nov 13 AB] RB] Phage nanowires] PDF copy of Atissa Bunuazizi's lecture is here
3 3 Thur Nov 15 AB] RB] TEM PDF copy of Yoon Sung Nam's lecture is here
Thanksgiving Break Nov 22-33 No lab or lecture all week
3 4 Tue Nov 27 AB] RB] Phage by design
3 5 Thur Nov 29 AB] RB] Phage by design, pt 2
3 6 Tue Dec 4 AB] RB] ECD assembly
3 7 Thur Dec 6 AB] RB] Oral presentations 56-302 on Thurs, December 6th
56-402 on Friday, December 7th
3 8 Tue Dec 11 AB] RB] end of term celebration... Lecture, no lab, for class evaluations then lunch from noon-1:30 PM, 32-G449
Retrieved from "http://engineerbiology.org/w/index.php?title=20.109(F07):_Fall_2007_schedule&oldid=13208"